Experiment: m.b. Nalidixic 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1773 and Dshi_1774 are separated by 39 nucleotides Dshi_1774 and Dshi_1775 are separated by 67 nucleotides Dshi_1775 and Dshi_R0032 are separated by 93 nucleotides Dshi_R0032 and Dshi_1776 are separated by 166 nucleotides Dshi_1776 and Dshi_1777 are separated by 77 nucleotides
Dshi_1773: Dshi_1773 - peptidase M48 Ste24p (RefSeq), at 1,839,968 to 1,840,660
_1773
Dshi_1774: Dshi_1774 - hypothetical protein (RefSeq), at 1,840,700 to 1,840,987
_1774
Dshi_1775: Dshi_1775 - (Glutamate--ammonia-ligase) adenylyltransferase (RefSeq), at 1,841,055 to 1,843,865
_1775
Dshi_R0032: Dshi_R0032 - tRNA-Val (RefSeq), at 1,843,959 to 1,844,033
_R0032
Dshi_1776: Dshi_1776 - hypothetical protein (RefSeq), at 1,844,200 to 1,844,541
_1776
Dshi_1777: Dshi_1777 - ATP-dependent protease La (RefSeq), at 1,844,619 to 1,847,027
_1777
Position (kb)
1841
1842
1843
1844 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1840.263 kb on + strand, within Dshi_1773 at 1840.493 kb on - strand, within Dshi_1773 at 1840.620 kb on + strand at 1840.652 kb on - strand at 1840.718 kb on - strand at 1841.243 kb on - strand at 1842.010 kb on - strand, within Dshi_1775 at 1842.054 kb on + strand, within Dshi_1775 at 1842.289 kb on - strand, within Dshi_1775 at 1842.578 kb on + strand, within Dshi_1775 at 1842.629 kb on + strand, within Dshi_1775 at 1842.769 kb on - strand, within Dshi_1775 at 1842.811 kb on + strand, within Dshi_1775 at 1842.905 kb on + strand, within Dshi_1775 at 1843.076 kb on - strand, within Dshi_1775 at 1843.334 kb on + strand, within Dshi_1775 at 1843.952 kb on - strand at 1844.255 kb on + strand, within Dshi_1776 at 1844.397 kb on - strand, within Dshi_1776 at 1844.534 kb on - strand at 1844.564 kb on - strand at 1844.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.048 mg/ml remove 1,840,263 + Dshi_1773 0.43 -0.3 1,840,493 - Dshi_1773 0.76 -0.5 1,840,620 + -1.7 1,840,652 - +0.5 1,840,718 - -0.7 1,841,243 - -1.3 1,842,010 - Dshi_1775 0.34 -0.5 1,842,054 + Dshi_1775 0.36 -1.9 1,842,289 - Dshi_1775 0.44 -1.2 1,842,578 + Dshi_1775 0.54 -0.2 1,842,629 + Dshi_1775 0.56 -1.4 1,842,769 - Dshi_1775 0.61 -0.5 1,842,811 + Dshi_1775 0.62 -0.7 1,842,905 + Dshi_1775 0.66 -1.9 1,843,076 - Dshi_1775 0.72 -0.7 1,843,334 + Dshi_1775 0.81 -0.3 1,843,952 - +0.3 1,844,255 + Dshi_1776 0.16 +1.8 1,844,397 - Dshi_1776 0.58 +0.3 1,844,534 - +0.3 1,844,564 - -0.2 1,844,715 - -0.6
Or see this region's nucleotide sequence