Experiment: m.b. Nalidixic 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1669 and Dshi_1670 overlap by 4 nucleotides Dshi_1670 and Dshi_1671 are separated by 16 nucleotides
Dshi_1669: Dshi_1669 - Nitrate reductase (EC 1.7.99.4) (from data) , at 1,736,304 to 1,738,925
_1669
Dshi_1670: Dshi_1670 - glycosyl transferase family 3 (RefSeq), at 1,738,922 to 1,739,893
_1670
Dshi_1671: Dshi_1671 - uroporphyrin-III C-methyltransferase (RefSeq), at 1,739,910 to 1,741,304
_1671
Position (kb)
1738
1739
1740 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1737.923 kb on + strand, within Dshi_1669 at 1737.992 kb on - strand, within Dshi_1669 at 1738.025 kb on + strand, within Dshi_1669 at 1738.177 kb on - strand, within Dshi_1669 at 1738.228 kb on + strand, within Dshi_1669 at 1738.282 kb on - strand, within Dshi_1669 at 1738.312 kb on + strand, within Dshi_1669 at 1738.398 kb on - strand, within Dshi_1669 at 1738.530 kb on - strand, within Dshi_1669 at 1738.951 kb on + strand at 1738.994 kb on - strand at 1739.018 kb on - strand at 1739.054 kb on + strand, within Dshi_1670 at 1739.056 kb on + strand, within Dshi_1670 at 1739.175 kb on + strand, within Dshi_1670 at 1739.249 kb on - strand, within Dshi_1670 at 1739.280 kb on - strand, within Dshi_1670 at 1739.303 kb on + strand, within Dshi_1670 at 1739.366 kb on - strand, within Dshi_1670 at 1739.607 kb on - strand, within Dshi_1670 at 1739.685 kb on - strand, within Dshi_1670 at 1739.833 kb on - strand at 1739.857 kb on + strand at 1739.910 kb on + strand at 1740.185 kb on + strand, within Dshi_1671 at 1740.214 kb on - strand, within Dshi_1671 at 1740.224 kb on + strand, within Dshi_1671 at 1740.240 kb on + strand, within Dshi_1671 at 1740.240 kb on + strand, within Dshi_1671 at 1740.248 kb on - strand, within Dshi_1671 at 1740.304 kb on + strand, within Dshi_1671 at 1740.463 kb on + strand, within Dshi_1671 at 1740.572 kb on + strand, within Dshi_1671 at 1740.582 kb on + strand, within Dshi_1671 at 1740.662 kb on + strand, within Dshi_1671 at 1740.752 kb on - strand, within Dshi_1671 at 1740.824 kb on + strand, within Dshi_1671 at 1740.828 kb on + strand, within Dshi_1671 at 1740.828 kb on + strand, within Dshi_1671
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.048 mg/ml remove 1,737,923 + Dshi_1669 0.62 +0.4 1,737,992 - Dshi_1669 0.64 -0.5 1,738,025 + Dshi_1669 0.66 +0.7 1,738,177 - Dshi_1669 0.71 +0.3 1,738,228 + Dshi_1669 0.73 -0.4 1,738,282 - Dshi_1669 0.75 -0.4 1,738,312 + Dshi_1669 0.77 -1.8 1,738,398 - Dshi_1669 0.80 -0.6 1,738,530 - Dshi_1669 0.85 +2.2 1,738,951 + -1.9 1,738,994 - -0.5 1,739,018 - -1.4 1,739,054 + Dshi_1670 0.14 -1.2 1,739,056 + Dshi_1670 0.14 -1.0 1,739,175 + Dshi_1670 0.26 -0.8 1,739,249 - Dshi_1670 0.34 -0.5 1,739,280 - Dshi_1670 0.37 -1.0 1,739,303 + Dshi_1670 0.39 -1.4 1,739,366 - Dshi_1670 0.46 +0.8 1,739,607 - Dshi_1670 0.70 -0.6 1,739,685 - Dshi_1670 0.78 +1.2 1,739,833 - -0.6 1,739,857 + -1.4 1,739,910 + -0.3 1,740,185 + Dshi_1671 0.20 -0.1 1,740,214 - Dshi_1671 0.22 +1.3 1,740,224 + Dshi_1671 0.23 +0.2 1,740,240 + Dshi_1671 0.24 -2.0 1,740,240 + Dshi_1671 0.24 +0.4 1,740,248 - Dshi_1671 0.24 +0.1 1,740,304 + Dshi_1671 0.28 +0.6 1,740,463 + Dshi_1671 0.40 -1.2 1,740,572 + Dshi_1671 0.47 +0.0 1,740,582 + Dshi_1671 0.48 +0.5 1,740,662 + Dshi_1671 0.54 +0.0 1,740,752 - Dshi_1671 0.60 -1.5 1,740,824 + Dshi_1671 0.66 +0.2 1,740,828 + Dshi_1671 0.66 +0.1 1,740,828 + Dshi_1671 0.66 -0.9
Or see this region's nucleotide sequence