Experiment: m.b. Nalidixic 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1638 and Dshi_1639 are separated by 61 nucleotides Dshi_1639 and Dshi_1640 overlap by 4 nucleotides Dshi_1640 and Dshi_1641 are separated by 12 nucleotides Dshi_1641 and Dshi_1642 are separated by 4 nucleotides
Dshi_1638: Dshi_1638 - small multidrug resistance protein (RefSeq), at 1,700,339 to 1,700,668
_1638
Dshi_1639: Dshi_1639 - hypothetical protein (RefSeq), at 1,700,730 to 1,701,272
_1639
Dshi_1640: Dshi_1640 - hypothetical protein (RefSeq), at 1,701,269 to 1,701,574
_1640
Dshi_1641: Dshi_1641 - protein of unknown function DUF1330 (RefSeq), at 1,701,587 to 1,701,880
_1641
Dshi_1642: Dshi_1642 - alanyl-tRNA synthetase (RefSeq), at 1,701,885 to 1,704,548
_1642
Position (kb)
1701
1702 Strain fitness (log2 ratio)
-1
0
1 at 1700.607 kb on - strand, within Dshi_1638 at 1700.644 kb on + strand at 1700.655 kb on + strand at 1700.669 kb on - strand at 1700.735 kb on - strand at 1700.742 kb on + strand at 1700.750 kb on - strand at 1700.772 kb on - strand at 1700.776 kb on - strand at 1700.854 kb on - strand, within Dshi_1639 at 1700.856 kb on + strand, within Dshi_1639 at 1700.864 kb on - strand, within Dshi_1639 at 1700.922 kb on - strand, within Dshi_1639 at 1701.132 kb on + strand, within Dshi_1639 at 1701.132 kb on + strand, within Dshi_1639 at 1701.140 kb on - strand, within Dshi_1639 at 1701.140 kb on - strand, within Dshi_1639 at 1701.275 kb on - strand at 1701.515 kb on - strand, within Dshi_1640 at 1701.647 kb on + strand, within Dshi_1641 at 1701.746 kb on - strand, within Dshi_1641
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.048 mg/ml remove 1,700,607 - Dshi_1638 0.81 -0.6 1,700,644 + -0.5 1,700,655 + +0.0 1,700,669 - +0.3 1,700,735 - -1.4 1,700,742 + +0.3 1,700,750 - -0.8 1,700,772 - +0.4 1,700,776 - +0.0 1,700,854 - Dshi_1639 0.23 -0.4 1,700,856 + Dshi_1639 0.23 +0.0 1,700,864 - Dshi_1639 0.25 -0.5 1,700,922 - Dshi_1639 0.35 +0.7 1,701,132 + Dshi_1639 0.74 -0.0 1,701,132 + Dshi_1639 0.74 -0.2 1,701,140 - Dshi_1639 0.76 -0.2 1,701,140 - Dshi_1639 0.76 +0.2 1,701,275 - -1.3 1,701,515 - Dshi_1640 0.80 -0.2 1,701,647 + Dshi_1641 0.20 +0.4 1,701,746 - Dshi_1641 0.54 +0.2
Or see this region's nucleotide sequence