Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1615
Experiment: m.b. Nalidixic 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Nalidixic 0.048 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,679,127 | + | Dshi_1614 | 0.68 | +0.8 | |
1,679,127 | + | Dshi_1614 | 0.68 | -0.1 | |
1,679,307 | - | Dshi_1614 | 0.79 | -0.6 | |
1,679,308 | + | Dshi_1614 | 0.79 | -0.1 | |
1,679,370 | - | Dshi_1614 | 0.83 | -1.6 | |
1,679,511 | - | +0.1 | |||
1,679,511 | - | -0.8 | |||
1,679,516 | - | +1.3 | |||
1,679,540 | + | -0.5 | |||
1,679,548 | - | +0.2 | |||
1,679,579 | - | +0.0 | |||
1,679,674 | - | +0.8 | |||
1,679,696 | + | +0.5 | |||
1,679,704 | - | +0.1 | |||
1,679,744 | + | +0.8 | |||
1,679,752 | - | -0.8 | |||
1,679,752 | - | -1.2 | |||
1,679,752 | - | -0.4 | |||
1,679,857 | + | -0.9 | |||
1,679,890 | + | -1.5 | |||
1,679,890 | + | -0.1 | |||
1,679,896 | - | -2.2 | |||
1,679,901 | - | -1.5 | |||
1,679,922 | + | -0.8 | |||
1,679,924 | + | -2.2 | |||
1,679,928 | + | -0.5 | |||
1,679,946 | - | -0.5 | |||
1,680,025 | - | +0.7 | |||
1,680,037 | + | -0.0 | |||
1,680,068 | - | -1.2 | |||
1,680,154 | + | Dshi_1615 | 0.12 | -0.6 | |
1,680,458 | - | Dshi_1615 | 0.64 | -0.2 | |
1,680,775 | + | -0.3 | |||
1,680,818 | - | Dshi_1616 | 0.11 | -1.2 | |
1,680,953 | + | Dshi_1616 | 0.22 | -1.0 | |
1,681,017 | + | Dshi_1616 | 0.28 | -0.4 | |
1,681,227 | - | Dshi_1616 | 0.45 | -0.1 | |
1,681,349 | - | Dshi_1616 | 0.55 | -0.6 | |
1,681,364 | - | Dshi_1616 | 0.56 | -1.3 | |
1,681,364 | - | Dshi_1616 | 0.56 | -1.2 | |
1,681,395 | + | Dshi_1616 | 0.59 | -0.6 |
Or see this region's nucleotide sequence