Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1306

Experiment: m.b. Nalidixic 0.048 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1304 and Dshi_1305 are separated by 139 nucleotidesDshi_1305 and Dshi_1306 are separated by 1 nucleotidesDshi_1306 and Dshi_1307 are separated by 341 nucleotidesDshi_1307 and Dshi_1308 overlap by 10 nucleotides Dshi_1304: Dshi_1304 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,358,832 to 1,359,620 _1304 Dshi_1305: Dshi_1305 - 17 kDa surface antigen (RefSeq), at 1,359,760 to 1,359,978 _1305 Dshi_1306: Dshi_1306 - hypothetical protein (RefSeq), at 1,359,980 to 1,360,588 _1306 Dshi_1307: Dshi_1307 - NADH-ubiquinone/plastoquinone oxidoreductase chain 3 (RefSeq), at 1,360,930 to 1,361,295 _1307 Dshi_1308: Dshi_1308 - NADH-quinone oxidoreductase, B subunit (RefSeq), at 1,361,286 to 1,361,819 _1308 Position (kb) 1359 1360 1361Strain fitness (log2 ratio) -2 -1 0 1 2at 1359.088 kb on - strand, within Dshi_1304at 1359.308 kb on - strand, within Dshi_1304at 1359.308 kb on - strand, within Dshi_1304at 1359.537 kb on - strandat 1359.638 kb on + strandat 1359.658 kb on + strandat 1359.725 kb on - strandat 1359.798 kb on + strand, within Dshi_1305at 1359.801 kb on - strand, within Dshi_1305at 1359.811 kb on - strand, within Dshi_1305at 1360.249 kb on + strand, within Dshi_1306at 1360.257 kb on - strand, within Dshi_1306at 1360.262 kb on + strand, within Dshi_1306at 1360.289 kb on + strand, within Dshi_1306at 1360.308 kb on - strand, within Dshi_1306at 1360.332 kb on - strand, within Dshi_1306at 1360.489 kb on + strand, within Dshi_1306at 1360.559 kb on - strandat 1360.562 kb on - strandat 1360.634 kb on - strandat 1360.653 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.048 mg/ml
remove
1,359,088 - Dshi_1304 0.32 -1.2
1,359,308 - Dshi_1304 0.60 +0.1
1,359,308 - Dshi_1304 0.60 -0.0
1,359,537 - -0.1
1,359,638 + +1.6
1,359,658 + -0.6
1,359,725 - +0.9
1,359,798 + Dshi_1305 0.17 +1.9
1,359,801 - Dshi_1305 0.19 +0.9
1,359,811 - Dshi_1305 0.23 +0.8
1,360,249 + Dshi_1306 0.44 -0.6
1,360,257 - Dshi_1306 0.45 +0.5
1,360,262 + Dshi_1306 0.46 -0.6
1,360,289 + Dshi_1306 0.51 +0.9
1,360,308 - Dshi_1306 0.54 +1.2
1,360,332 - Dshi_1306 0.58 -0.5
1,360,489 + Dshi_1306 0.84 +0.3
1,360,559 - -0.4
1,360,562 - -1.1
1,360,634 - -2.4
1,360,653 - +0.3

Or see this region's nucleotide sequence