Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1215
Experiment: m.b. Nalidixic 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Nalidixic 0.048 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,253,913 | - | Dshi_1214 | 0.15 | -0.1 | |
1,253,934 | + | Dshi_1214 | 0.17 | +0.8 | |
1,254,005 | - | Dshi_1214 | 0.23 | -1.6 | |
1,254,005 | - | Dshi_1214 | 0.23 | +0.3 | |
1,254,005 | - | Dshi_1214 | 0.23 | +0.4 | |
1,254,039 | - | Dshi_1214 | 0.26 | -0.2 | |
1,254,476 | - | Dshi_1214 | 0.63 | -1.1 | |
1,254,527 | + | Dshi_1214 | 0.67 | -1.0 | |
1,254,527 | + | Dshi_1214 | 0.67 | -1.0 | |
1,254,528 | - | Dshi_1214 | 0.67 | -1.6 | |
1,254,535 | - | Dshi_1214 | 0.68 | -0.2 | |
1,254,535 | - | Dshi_1214 | 0.68 | -1.4 | |
1,254,619 | + | Dshi_1214 | 0.75 | -1.6 | |
1,254,867 | - | -2.7 | |||
1,254,882 | - | +0.3 | |||
1,255,042 | + | Dshi_1215 | 0.16 | -0.9 | |
1,255,094 | - | Dshi_1215 | 0.22 | -0.5 | |
1,255,094 | - | Dshi_1215 | 0.22 | +1.0 | |
1,255,158 | + | Dshi_1215 | 0.30 | -1.4 | |
1,255,158 | + | Dshi_1215 | 0.30 | -1.8 | |
1,255,200 | + | Dshi_1215 | 0.35 | -0.6 | |
1,255,443 | + | Dshi_1215 | 0.65 | -0.9 | |
1,255,610 | + | Dshi_1215 | 0.86 | +0.1 |
Or see this region's nucleotide sequence