Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1157

Experiment: m.b. Nalidixic 0.048 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1155 and Dshi_1156 are separated by 137 nucleotidesDshi_1156 and Dshi_1157 are separated by 84 nucleotidesDshi_1157 and Dshi_1158 are separated by 49 nucleotides Dshi_1155: Dshi_1155 - uroporphyrin-III C-methyltransferase (RefSeq), at 1,180,655 to 1,182,040 _1155 Dshi_1156: Dshi_1156 - transcriptional regulator, AsnC family (RefSeq), at 1,182,178 to 1,182,645 _1156 Dshi_1157: Dshi_1157 - protein of unknown function UPF0061 (RefSeq), at 1,182,730 to 1,184,175 _1157 Dshi_1158: Dshi_1158 - Inosine/uridine-preferring nucleoside hydrolase (RefSeq), at 1,184,225 to 1,185,181 _1158 Position (kb) 1182 1183 1184 1185Strain fitness (log2 ratio) -2 -1 0 1at 1182.658 kb on + strandat 1182.926 kb on + strand, within Dshi_1157at 1182.991 kb on - strand, within Dshi_1157at 1183.210 kb on + strand, within Dshi_1157at 1183.246 kb on + strand, within Dshi_1157at 1183.246 kb on + strand, within Dshi_1157at 1183.254 kb on - strand, within Dshi_1157at 1183.280 kb on + strand, within Dshi_1157at 1183.364 kb on + strand, within Dshi_1157at 1183.543 kb on - strand, within Dshi_1157at 1183.550 kb on - strand, within Dshi_1157at 1183.748 kb on - strand, within Dshi_1157at 1183.790 kb on - strand, within Dshi_1157at 1183.954 kb on + strand, within Dshi_1157at 1183.962 kb on - strand, within Dshi_1157at 1184.095 kb on + strandat 1184.223 kb on + strandat 1184.223 kb on + strandat 1184.325 kb on - strand, within Dshi_1158at 1184.399 kb on - strand, within Dshi_1158at 1184.438 kb on + strand, within Dshi_1158at 1184.650 kb on + strand, within Dshi_1158at 1184.782 kb on + strand, within Dshi_1158at 1184.815 kb on + strand, within Dshi_1158at 1184.876 kb on - strand, within Dshi_1158at 1184.887 kb on + strand, within Dshi_1158at 1184.990 kb on + strand, within Dshi_1158at 1185.163 kb on + strandat 1185.163 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.048 mg/ml
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1,182,658 + -0.7
1,182,926 + Dshi_1157 0.14 -1.0
1,182,991 - Dshi_1157 0.18 -0.2
1,183,210 + Dshi_1157 0.33 -1.0
1,183,246 + Dshi_1157 0.36 -1.2
1,183,246 + Dshi_1157 0.36 +0.3
1,183,254 - Dshi_1157 0.36 -1.2
1,183,280 + Dshi_1157 0.38 -0.7
1,183,364 + Dshi_1157 0.44 -0.6
1,183,543 - Dshi_1157 0.56 -2.2
1,183,550 - Dshi_1157 0.57 +0.8
1,183,748 - Dshi_1157 0.70 -0.5
1,183,790 - Dshi_1157 0.73 -1.9
1,183,954 + Dshi_1157 0.85 +0.1
1,183,962 - Dshi_1157 0.85 -0.1
1,184,095 + +0.7
1,184,223 + +0.8
1,184,223 + -0.5
1,184,325 - Dshi_1158 0.10 -0.7
1,184,399 - Dshi_1158 0.18 -0.2
1,184,438 + Dshi_1158 0.22 -1.3
1,184,650 + Dshi_1158 0.44 -0.2
1,184,782 + Dshi_1158 0.58 -0.7
1,184,815 + Dshi_1158 0.62 +1.0
1,184,876 - Dshi_1158 0.68 -1.4
1,184,887 + Dshi_1158 0.69 -2.7
1,184,990 + Dshi_1158 0.80 -0.1
1,185,163 + -0.5
1,185,163 + -0.7

Or see this region's nucleotide sequence