Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0980

Experiment: m.b. Nalidixic 0.048 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0979 and Dshi_0980 overlap by 4 nucleotidesDshi_0980 and Dshi_0981 are separated by 3 nucleotidesDshi_0981 and Dshi_0982 are separated by 149 nucleotidesDshi_0982 and Dshi_0983 are separated by 2 nucleotides Dshi_0979: Dshi_0979 - Histidinol dehydrogenase (RefSeq), at 1,000,537 to 1,001,853 _0979 Dshi_0980: Dshi_0980 - hypothetical protein (RefSeq), at 1,001,850 to 1,002,329 _0980 Dshi_0981: Dshi_0981 - protein tyrosine phosphatase (RefSeq), at 1,002,333 to 1,002,788 _0981 Dshi_0982: Dshi_0982 - translation initiation factor IF-1 (RefSeq), at 1,002,938 to 1,003,156 _0982 Dshi_0983: Dshi_0983 - maf protein (RefSeq), at 1,003,159 to 1,003,743 _0983 Position (kb) 1001 1002 1003Strain fitness (log2 ratio) -2 -1 0 1at 1001.934 kb on + strand, within Dshi_0980at 1002.004 kb on + strand, within Dshi_0980at 1002.010 kb on + strand, within Dshi_0980at 1002.060 kb on + strand, within Dshi_0980at 1002.167 kb on + strand, within Dshi_0980at 1002.175 kb on - strand, within Dshi_0980at 1002.190 kb on - strand, within Dshi_0980at 1002.201 kb on + strand, within Dshi_0980at 1002.459 kb on + strand, within Dshi_0981at 1002.567 kb on + strand, within Dshi_0981at 1002.611 kb on + strand, within Dshi_0981at 1002.627 kb on - strand, within Dshi_0981at 1002.659 kb on - strand, within Dshi_0981at 1002.659 kb on - strand, within Dshi_0981at 1002.687 kb on + strand, within Dshi_0981at 1002.720 kb on + strand, within Dshi_0981at 1002.723 kb on - strand, within Dshi_0981at 1003.232 kb on - strand, within Dshi_0983

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.048 mg/ml
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1,001,934 + Dshi_0980 0.17 +0.6
1,002,004 + Dshi_0980 0.32 +0.8
1,002,010 + Dshi_0980 0.33 +0.2
1,002,060 + Dshi_0980 0.44 -0.0
1,002,167 + Dshi_0980 0.66 +0.4
1,002,175 - Dshi_0980 0.68 -1.4
1,002,190 - Dshi_0980 0.71 +0.0
1,002,201 + Dshi_0980 0.73 +0.4
1,002,459 + Dshi_0981 0.28 -0.7
1,002,567 + Dshi_0981 0.51 -1.1
1,002,611 + Dshi_0981 0.61 -1.8
1,002,627 - Dshi_0981 0.64 +0.3
1,002,659 - Dshi_0981 0.71 +0.3
1,002,659 - Dshi_0981 0.71 +0.8
1,002,687 + Dshi_0981 0.78 -1.8
1,002,720 + Dshi_0981 0.85 -0.8
1,002,723 - Dshi_0981 0.86 +1.2
1,003,232 - Dshi_0983 0.12 +1.1

Or see this region's nucleotide sequence