Experiment: m.b. Nalidixic 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0551 and Dshi_0552 overlap by 4 nucleotides Dshi_0552 and Dshi_0553 are separated by 3 nucleotides
Dshi_0551: Dshi_0551 - D-xylulose reductase (EC 1.1.1.9) <small>(from data)</small>, at 538,237 to 539,280
_0551
Dshi_0552: Dshi_0552 - sugar isomerase (SIS) (RefSeq), at 539,277 to 539,843
_0552
Dshi_0553: Dshi_0553 - short-chain dehydrogenase/reductase SDR (RefSeq), at 539,847 to 540,614
_0553
Position (kb) 539
540 Strain fitness (log2 ratio) -2
-1
0
1
2 at 538.305 kb on + strand at 538.310 kb on + strand at 538.310 kb on + strand at 538.350 kb on - strand, within Dshi_0551 at 538.368 kb on + strand, within Dshi_0551 at 538.376 kb on - strand, within Dshi_0551 at 538.378 kb on - strand, within Dshi_0551 at 538.476 kb on + strand, within Dshi_0551 at 538.494 kb on + strand, within Dshi_0551 at 538.523 kb on + strand, within Dshi_0551 at 538.532 kb on + strand, within Dshi_0551 at 538.572 kb on + strand, within Dshi_0551 at 538.572 kb on + strand, within Dshi_0551 at 538.581 kb on + strand, within Dshi_0551 at 538.585 kb on - strand, within Dshi_0551 at 538.591 kb on + strand, within Dshi_0551 at 538.613 kb on + strand, within Dshi_0551 at 538.618 kb on - strand, within Dshi_0551 at 538.637 kb on + strand, within Dshi_0551 at 538.688 kb on - strand, within Dshi_0551 at 538.757 kb on + strand, within Dshi_0551 at 538.882 kb on + strand, within Dshi_0551 at 538.940 kb on - strand, within Dshi_0551 at 539.118 kb on + strand, within Dshi_0551 at 539.127 kb on - strand, within Dshi_0551 at 539.231 kb on + strand at 539.357 kb on + strand, within Dshi_0552 at 539.432 kb on - strand, within Dshi_0552 at 539.625 kb on - strand, within Dshi_0552 at 539.678 kb on + strand, within Dshi_0552 at 539.681 kb on - strand, within Dshi_0552 at 539.700 kb on + strand, within Dshi_0552 at 539.708 kb on - strand, within Dshi_0552 at 539.708 kb on - strand, within Dshi_0552 at 539.710 kb on + strand, within Dshi_0552 at 539.710 kb on + strand, within Dshi_0552 at 539.742 kb on + strand, within Dshi_0552 at 539.750 kb on - strand, within Dshi_0552 at 539.796 kb on - strand at 539.796 kb on - strand at 539.796 kb on - strand at 539.798 kb on + strand at 539.812 kb on - strand at 539.813 kb on - strand at 539.833 kb on + strand at 539.876 kb on + strand at 539.876 kb on + strand at 539.884 kb on - strand at 539.926 kb on + strand, within Dshi_0553 at 539.928 kb on + strand, within Dshi_0553 at 539.970 kb on + strand, within Dshi_0553 at 539.971 kb on + strand, within Dshi_0553 at 539.976 kb on + strand, within Dshi_0553 at 539.976 kb on + strand, within Dshi_0553 at 539.979 kb on - strand, within Dshi_0553 at 539.984 kb on - strand, within Dshi_0553 at 540.008 kb on + strand, within Dshi_0553 at 540.008 kb on + strand, within Dshi_0553 at 540.008 kb on + strand, within Dshi_0553 at 540.008 kb on + strand, within Dshi_0553 at 540.008 kb on + strand, within Dshi_0553 at 540.008 kb on + strand, within Dshi_0553 at 540.008 kb on + strand, within Dshi_0553 at 540.008 kb on + strand, within Dshi_0553 at 540.008 kb on + strand, within Dshi_0553 at 540.008 kb on + strand, within Dshi_0553 at 540.008 kb on + strand, within Dshi_0553 at 540.008 kb on + strand, within Dshi_0553 at 540.016 kb on - strand, within Dshi_0553 at 540.016 kb on - strand, within Dshi_0553 at 540.016 kb on - strand, within Dshi_0553 at 540.016 kb on - strand, within Dshi_0553 at 540.016 kb on - strand, within Dshi_0553 at 540.016 kb on - strand, within Dshi_0553 at 540.016 kb on - strand, within Dshi_0553 at 540.043 kb on + strand, within Dshi_0553 at 540.091 kb on - strand, within Dshi_0553 at 540.092 kb on - strand, within Dshi_0553 at 540.092 kb on - strand, within Dshi_0553 at 540.141 kb on + strand, within Dshi_0553 at 540.141 kb on + strand, within Dshi_0553 at 540.144 kb on - strand, within Dshi_0553 at 540.149 kb on - strand, within Dshi_0553 at 540.196 kb on + strand, within Dshi_0553 at 540.204 kb on - strand, within Dshi_0553 at 540.222 kb on - strand, within Dshi_0553 at 540.224 kb on + strand, within Dshi_0553 at 540.224 kb on + strand, within Dshi_0553 at 540.232 kb on - strand, within Dshi_0553 at 540.247 kb on - strand, within Dshi_0553 at 540.271 kb on - strand, within Dshi_0553 at 540.294 kb on + strand, within Dshi_0553 at 540.294 kb on + strand, within Dshi_0553 at 540.294 kb on + strand, within Dshi_0553 at 540.294 kb on + strand, within Dshi_0553 at 540.302 kb on - strand, within Dshi_0553 at 540.302 kb on - strand, within Dshi_0553 at 540.302 kb on - strand, within Dshi_0553 at 540.302 kb on - strand, within Dshi_0553 at 540.321 kb on + strand, within Dshi_0553 at 540.332 kb on + strand, within Dshi_0553 at 540.338 kb on - strand, within Dshi_0553 at 540.338 kb on - strand, within Dshi_0553 at 540.338 kb on - strand, within Dshi_0553 at 540.339 kb on - strand, within Dshi_0553 at 540.339 kb on - strand, within Dshi_0553 at 540.344 kb on + strand, within Dshi_0553 at 540.351 kb on + strand, within Dshi_0553 at 540.351 kb on + strand, within Dshi_0553 at 540.356 kb on + strand, within Dshi_0553 at 540.364 kb on - strand, within Dshi_0553 at 540.398 kb on + strand, within Dshi_0553 at 540.398 kb on + strand, within Dshi_0553 at 540.398 kb on + strand, within Dshi_0553 at 540.398 kb on + strand, within Dshi_0553 at 540.398 kb on + strand, within Dshi_0553 at 540.399 kb on - strand, within Dshi_0553 at 540.401 kb on - strand, within Dshi_0553 at 540.406 kb on + strand, within Dshi_0553 at 540.406 kb on - strand, within Dshi_0553 at 540.406 kb on - strand, within Dshi_0553 at 540.406 kb on - strand, within Dshi_0553 at 540.406 kb on - strand, within Dshi_0553 at 540.406 kb on - strand, within Dshi_0553 at 540.406 kb on - strand, within Dshi_0553 at 540.406 kb on - strand, within Dshi_0553 at 540.406 kb on - strand, within Dshi_0553 at 540.406 kb on - strand, within Dshi_0553 at 540.415 kb on + strand, within Dshi_0553 at 540.418 kb on + strand, within Dshi_0553 at 540.418 kb on + strand, within Dshi_0553 at 540.426 kb on - strand, within Dshi_0553 at 540.426 kb on - strand, within Dshi_0553 at 540.426 kb on - strand, within Dshi_0553 at 540.431 kb on - strand, within Dshi_0553 at 540.452 kb on - strand, within Dshi_0553 at 540.457 kb on - strand, within Dshi_0553 at 540.474 kb on - strand, within Dshi_0553 at 540.483 kb on + strand, within Dshi_0553 at 540.488 kb on + strand, within Dshi_0553 at 540.534 kb on + strand, within Dshi_0553 at 540.539 kb on + strand at 540.539 kb on + strand at 540.542 kb on - strand at 540.542 kb on - strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.556 kb on + strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.564 kb on - strand at 540.574 kb on - strand at 540.574 kb on - strand at 540.574 kb on - strand at 540.574 kb on - strand at 540.574 kb on - strand at 540.579 kb on + strand at 540.579 kb on + strand at 540.587 kb on - strand at 540.594 kb on + strand at 540.597 kb on + strand at 540.607 kb on + strand at 540.612 kb on + strand at 540.618 kb on + strand at 540.618 kb on + strand at 540.620 kb on - strand at 540.634 kb on + strand at 540.637 kb on - strand at 540.639 kb on + strand at 540.639 kb on + strand at 540.639 kb on + strand at 540.639 kb on + strand at 540.644 kb on + strand at 540.647 kb on + strand at 540.647 kb on - strand at 540.649 kb on + strand at 540.649 kb on + strand at 540.652 kb on - strand at 540.654 kb on + strand at 540.654 kb on + strand at 540.657 kb on - strand at 540.672 kb on + strand at 540.673 kb on + strand at 540.686 kb on - strand at 540.705 kb on - strand at 540.743 kb on + strand at 540.776 kb on - strand at 540.802 kb on + strand at 540.802 kb on + strand at 540.805 kb on - strand at 540.806 kb on + strand at 540.806 kb on + strand at 540.810 kb on - strand at 540.811 kb on + strand at 540.812 kb on + strand at 540.819 kb on - strand at 540.819 kb on - strand at 540.819 kb on - strand at 540.819 kb on - strand at 540.819 kb on - strand at 540.819 kb on - strand at 540.821 kb on - strand at 540.828 kb on + strand at 540.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.048 mg/ml remove 538,305 + -0.3 538,310 + +0.0 538,310 + -0.8 538,350 - Dshi_0551 0.11 -0.6 538,368 + Dshi_0551 0.13 +0.2 538,376 - Dshi_0551 0.13 +0.2 538,378 - Dshi_0551 0.14 -0.7 538,476 + Dshi_0551 0.23 -0.8 538,494 + Dshi_0551 0.25 -0.4 538,523 + Dshi_0551 0.27 -0.1 538,532 + Dshi_0551 0.28 +0.0 538,572 + Dshi_0551 0.32 -0.9 538,572 + Dshi_0551 0.32 -1.1 538,581 + Dshi_0551 0.33 -1.5 538,585 - Dshi_0551 0.33 -1.9 538,591 + Dshi_0551 0.34 -0.9 538,613 + Dshi_0551 0.36 -0.5 538,618 - Dshi_0551 0.36 -0.2 538,637 + Dshi_0551 0.38 +1.6 538,688 - Dshi_0551 0.43 -0.4 538,757 + Dshi_0551 0.50 -1.0 538,882 + Dshi_0551 0.62 -0.4 538,940 - Dshi_0551 0.67 +1.6 539,118 + Dshi_0551 0.84 -1.5 539,127 - Dshi_0551 0.85 -0.4 539,231 + -0.7 539,357 + Dshi_0552 0.14 -0.2 539,432 - Dshi_0552 0.27 +0.4 539,625 - Dshi_0552 0.61 +0.1 539,678 + Dshi_0552 0.71 -0.4 539,681 - Dshi_0552 0.71 -0.9 539,700 + Dshi_0552 0.75 +0.9 539,708 - Dshi_0552 0.76 +0.3 539,708 - Dshi_0552 0.76 +2.6 539,710 + Dshi_0552 0.76 +1.0 539,710 + Dshi_0552 0.76 -1.0 539,742 + Dshi_0552 0.82 +0.6 539,750 - Dshi_0552 0.83 -1.4 539,796 - -0.5 539,796 - -0.1 539,796 - +0.2 539,798 + -2.5 539,812 - -0.9 539,813 - +0.6 539,833 + +0.0 539,876 + -0.1 539,876 + +0.4 539,884 - -0.8 539,926 + Dshi_0553 0.10 -0.7 539,928 + Dshi_0553 0.11 -0.6 539,970 + Dshi_0553 0.16 -0.0 539,971 + Dshi_0553 0.16 +0.3 539,976 + Dshi_0553 0.17 -0.8 539,976 + Dshi_0553 0.17 -1.2 539,979 - Dshi_0553 0.17 -1.0 539,984 - Dshi_0553 0.18 -0.2 540,008 + Dshi_0553 0.21 +0.0 540,008 + Dshi_0553 0.21 -0.9 540,008 + Dshi_0553 0.21 -0.2 540,008 + Dshi_0553 0.21 +1.0 540,008 + Dshi_0553 0.21 +0.3 540,008 + Dshi_0553 0.21 -0.3 540,008 + Dshi_0553 0.21 -0.1 540,008 + Dshi_0553 0.21 -0.3 540,008 + Dshi_0553 0.21 -0.1 540,008 + Dshi_0553 0.21 -0.5 540,008 + Dshi_0553 0.21 -0.6 540,008 + Dshi_0553 0.21 +0.2 540,016 - Dshi_0553 0.22 -0.2 540,016 - Dshi_0553 0.22 -0.7 540,016 - Dshi_0553 0.22 +0.0 540,016 - Dshi_0553 0.22 -0.3 540,016 - Dshi_0553 0.22 -0.2 540,016 - Dshi_0553 0.22 -0.1 540,016 - Dshi_0553 0.22 -0.5 540,043 + Dshi_0553 0.26 -0.1 540,091 - Dshi_0553 0.32 -0.4 540,092 - Dshi_0553 0.32 +0.0 540,092 - Dshi_0553 0.32 -0.0 540,141 + Dshi_0553 0.38 -0.5 540,141 + Dshi_0553 0.38 +0.6 540,144 - Dshi_0553 0.39 -0.2 540,149 - Dshi_0553 0.39 -0.6 540,196 + Dshi_0553 0.45 +1.6 540,204 - Dshi_0553 0.46 -0.4 540,222 - Dshi_0553 0.49 -0.9 540,224 + Dshi_0553 0.49 -0.2 540,224 + Dshi_0553 0.49 -0.4 540,232 - Dshi_0553 0.50 -0.4 540,247 - Dshi_0553 0.52 -0.7 540,271 - Dshi_0553 0.55 -0.3 540,294 + Dshi_0553 0.58 +0.6 540,294 + Dshi_0553 0.58 -0.5 540,294 + Dshi_0553 0.58 +1.2 540,294 + Dshi_0553 0.58 +2.0 540,302 - Dshi_0553 0.59 +0.2 540,302 - Dshi_0553 0.59 +0.6 540,302 - Dshi_0553 0.59 -1.2 540,302 - Dshi_0553 0.59 -1.1 540,321 + Dshi_0553 0.62 -0.7 540,332 + Dshi_0553 0.63 -0.6 540,338 - Dshi_0553 0.64 +0.0 540,338 - Dshi_0553 0.64 -1.3 540,338 - Dshi_0553 0.64 +1.2 540,339 - Dshi_0553 0.64 -0.6 540,339 - Dshi_0553 0.64 -1.4 540,344 + Dshi_0553 0.65 -2.0 540,351 + Dshi_0553 0.66 -1.0 540,351 + Dshi_0553 0.66 +1.3 540,356 + Dshi_0553 0.66 -0.1 540,364 - Dshi_0553 0.67 -2.1 540,398 + Dshi_0553 0.72 +1.3 540,398 + Dshi_0553 0.72 -0.9 540,398 + Dshi_0553 0.72 -0.8 540,398 + Dshi_0553 0.72 +0.0 540,398 + Dshi_0553 0.72 +1.6 540,399 - Dshi_0553 0.72 -0.2 540,401 - Dshi_0553 0.72 +0.4 540,406 + Dshi_0553 0.73 -0.6 540,406 - Dshi_0553 0.73 -0.0 540,406 - Dshi_0553 0.73 -1.8 540,406 - Dshi_0553 0.73 -0.6 540,406 - Dshi_0553 0.73 -0.1 540,406 - Dshi_0553 0.73 +0.3 540,406 - Dshi_0553 0.73 +0.2 540,406 - Dshi_0553 0.73 -1.0 540,406 - Dshi_0553 0.73 -0.8 540,406 - Dshi_0553 0.73 +0.2 540,415 + Dshi_0553 0.74 -0.2 540,418 + Dshi_0553 0.74 -1.0 540,418 + Dshi_0553 0.74 +0.0 540,426 - Dshi_0553 0.75 -1.3 540,426 - Dshi_0553 0.75 -0.2 540,426 - Dshi_0553 0.75 -1.5 540,431 - Dshi_0553 0.76 -0.5 540,452 - Dshi_0553 0.79 -0.2 540,457 - Dshi_0553 0.79 -1.1 540,474 - Dshi_0553 0.82 +0.0 540,483 + Dshi_0553 0.83 +1.6 540,488 + Dshi_0553 0.83 -0.3 540,534 + Dshi_0553 0.89 -0.0 540,539 + -1.0 540,539 + -0.3 540,542 - -1.2 540,542 - -0.4 540,556 + +1.1 540,556 + -0.4 540,556 + -1.1 540,556 + -0.6 540,556 + +1.0 540,556 + -1.1 540,556 + -0.0 540,556 + -0.6 540,556 + -1.7 540,556 + +0.3 540,556 + -1.0 540,556 + -1.0 540,556 + -0.2 540,556 + -0.4 540,556 + -0.2 540,556 + +0.3 540,556 + -0.2 540,556 + -0.1 540,556 + -0.5 540,556 + -0.1 540,556 + -0.1 540,556 + +0.0 540,556 + -0.0 540,556 + -0.9 540,556 + -0.2 540,556 + -0.5 540,556 + +1.4 540,556 + -1.0 540,556 + -1.6 540,556 + +0.6 540,556 + +1.3 540,556 + +0.1 540,564 - -0.9 540,564 - -0.5 540,564 - -0.1 540,564 - -0.1 540,564 - -0.0 540,564 - -1.0 540,564 - -0.5 540,564 - +1.4 540,564 - -0.7 540,564 - -0.8 540,564 - +0.0 540,564 - -0.2 540,564 - -0.5 540,564 - -0.4 540,564 - +1.0 540,564 - +0.3 540,564 - +0.0 540,564 - -2.2 540,564 - -2.1 540,564 - +0.4 540,564 - -1.7 540,564 - -0.2 540,564 - -1.2 540,564 - +0.8 540,564 - -0.4 540,564 - +0.5 540,564 - -0.9 540,564 - +1.0 540,564 - -0.1 540,564 - -1.0 540,564 - -1.5 540,574 - -0.1 540,574 - -0.3 540,574 - -1.0 540,574 - +2.6 540,574 - +0.2 540,579 + -1.5 540,579 + -2.0 540,587 - -0.2 540,594 + +0.6 540,597 + -0.7 540,607 + -0.4 540,612 + -0.1 540,618 + -0.5 540,618 + -0.8 540,620 - -0.0 540,634 + -0.5 540,637 - -1.5 540,639 + -0.2 540,639 + -0.1 540,639 + -0.9 540,639 + +1.1 540,644 + +0.5 540,647 + +0.4 540,647 - -0.5 540,649 + -0.3 540,649 + -1.4 540,652 - -1.1 540,654 + +0.4 540,654 + +0.5 540,657 - -0.2 540,672 + -0.7 540,673 + +0.0 540,686 - -0.8 540,705 - -1.3 540,743 + -0.3 540,776 - -1.0 540,802 + -0.3 540,802 + +0.1 540,805 - +0.4 540,806 + +0.4 540,806 + -0.4 540,810 - +0.8 540,811 + -1.0 540,812 + -0.0 540,819 - +0.6 540,819 - -1.0 540,819 - -1.1 540,819 - +0.0 540,819 - +0.0 540,819 - -0.6 540,821 - +1.3 540,828 + -1.1 540,837 - +0.6
Or see this region's nucleotide sequence