Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0537

Experiment: m.b. Nalidixic 0.048 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0536 and Dshi_0537 are separated by 29 nucleotidesDshi_0537 and Dshi_0538 are separated by 185 nucleotidesDshi_0538 and Dshi_0539 are separated by 13 nucleotides Dshi_0536: Dshi_0536 - biotin/lipoyl attachment domain-containing protein (RefSeq), at 520,939 to 522,135 _0536 Dshi_0537: Dshi_0537 - carbohydrate kinase FGGY (RefSeq), at 522,165 to 523,658 _0537 Dshi_0538: Dshi_0538 - protein of unknown function DUF1045 (RefSeq), at 523,844 to 524,515 _0538 Dshi_0539: Dshi_0539 - aldo/keto reductase (RefSeq), at 524,529 to 525,467 _0539 Position (kb) 522 523 524Strain fitness (log2 ratio) -3 -2 -1 0 1at 521.171 kb on + strand, within Dshi_0536at 521.171 kb on + strand, within Dshi_0536at 521.179 kb on - strand, within Dshi_0536at 521.234 kb on + strand, within Dshi_0536at 521.339 kb on + strand, within Dshi_0536at 521.415 kb on + strand, within Dshi_0536at 521.423 kb on - strand, within Dshi_0536at 521.440 kb on + strand, within Dshi_0536at 521.500 kb on - strand, within Dshi_0536at 521.534 kb on + strand, within Dshi_0536at 521.587 kb on - strand, within Dshi_0536at 521.614 kb on - strand, within Dshi_0536at 521.678 kb on + strand, within Dshi_0536at 521.797 kb on - strand, within Dshi_0536at 521.934 kb on - strand, within Dshi_0536at 521.953 kb on + strand, within Dshi_0536at 521.953 kb on + strand, within Dshi_0536at 521.994 kb on + strand, within Dshi_0536at 522.066 kb on + strandat 522.106 kb on - strandat 522.140 kb on + strandat 522.153 kb on - strandat 522.155 kb on + strandat 522.155 kb on + strandat 522.155 kb on + strandat 522.155 kb on + strandat 522.190 kb on + strandat 522.204 kb on - strandat 522.303 kb on + strandat 522.303 kb on + strandat 522.334 kb on - strand, within Dshi_0537at 522.425 kb on + strand, within Dshi_0537at 522.468 kb on + strand, within Dshi_0537at 522.498 kb on + strand, within Dshi_0537at 522.541 kb on + strand, within Dshi_0537at 522.549 kb on - strand, within Dshi_0537at 522.549 kb on - strand, within Dshi_0537at 522.551 kb on + strand, within Dshi_0537at 522.563 kb on + strand, within Dshi_0537at 522.663 kb on - strand, within Dshi_0537at 522.663 kb on - strand, within Dshi_0537at 522.665 kb on + strand, within Dshi_0537at 522.694 kb on - strand, within Dshi_0537at 522.707 kb on - strand, within Dshi_0537at 522.756 kb on + strand, within Dshi_0537at 522.769 kb on - strand, within Dshi_0537at 522.774 kb on - strand, within Dshi_0537at 522.774 kb on - strand, within Dshi_0537at 522.869 kb on + strand, within Dshi_0537at 522.869 kb on + strand, within Dshi_0537at 522.916 kb on + strand, within Dshi_0537at 522.936 kb on + strand, within Dshi_0537at 522.942 kb on - strand, within Dshi_0537at 522.944 kb on - strand, within Dshi_0537at 522.944 kb on - strand, within Dshi_0537at 523.027 kb on - strand, within Dshi_0537at 523.106 kb on + strand, within Dshi_0537at 523.142 kb on + strand, within Dshi_0537at 523.176 kb on - strand, within Dshi_0537at 523.215 kb on + strand, within Dshi_0537at 523.215 kb on + strand, within Dshi_0537at 523.223 kb on - strand, within Dshi_0537at 523.223 kb on - strand, within Dshi_0537at 523.223 kb on - strand, within Dshi_0537at 523.274 kb on + strand, within Dshi_0537at 523.303 kb on - strand, within Dshi_0537at 523.393 kb on + strand, within Dshi_0537at 523.393 kb on + strand, within Dshi_0537at 523.544 kb on + strandat 523.544 kb on + strandat 523.552 kb on - strandat 523.552 kb on - strandat 523.574 kb on + strandat 523.584 kb on + strandat 523.597 kb on - strandat 523.609 kb on - strandat 523.640 kb on - strandat 523.752 kb on - strandat 523.753 kb on - strandat 523.754 kb on + strandat 523.762 kb on - strandat 523.766 kb on - strandat 523.813 kb on + strandat 523.813 kb on - strandat 524.540 kb on - strandat 524.572 kb on + strandat 524.577 kb on + strandat 524.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.048 mg/ml
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521,171 + Dshi_0536 0.19 +0.5
521,171 + Dshi_0536 0.19 -0.7
521,179 - Dshi_0536 0.20 -1.0
521,234 + Dshi_0536 0.25 +1.4
521,339 + Dshi_0536 0.33 +0.8
521,415 + Dshi_0536 0.40 +0.0
521,423 - Dshi_0536 0.40 -2.0
521,440 + Dshi_0536 0.42 -1.4
521,500 - Dshi_0536 0.47 -1.3
521,534 + Dshi_0536 0.50 +0.0
521,587 - Dshi_0536 0.54 -0.2
521,614 - Dshi_0536 0.56 -0.0
521,678 + Dshi_0536 0.62 -0.6
521,797 - Dshi_0536 0.72 -0.4
521,934 - Dshi_0536 0.83 +0.8
521,953 + Dshi_0536 0.85 -0.9
521,953 + Dshi_0536 0.85 -2.0
521,994 + Dshi_0536 0.88 -1.0
522,066 + +0.4
522,106 - -0.1
522,140 + +0.6
522,153 - -0.1
522,155 + -0.7
522,155 + -1.6
522,155 + -0.1
522,155 + -2.0
522,190 + +0.7
522,204 - +0.0
522,303 + +0.1
522,303 + +0.4
522,334 - Dshi_0537 0.11 -0.4
522,425 + Dshi_0537 0.17 +1.3
522,468 + Dshi_0537 0.20 -1.0
522,498 + Dshi_0537 0.22 +0.6
522,541 + Dshi_0537 0.25 -0.7
522,549 - Dshi_0537 0.26 -0.7
522,549 - Dshi_0537 0.26 -0.0
522,551 + Dshi_0537 0.26 -0.3
522,563 + Dshi_0537 0.27 -0.3
522,663 - Dshi_0537 0.33 -0.5
522,663 - Dshi_0537 0.33 -0.8
522,665 + Dshi_0537 0.33 +0.4
522,694 - Dshi_0537 0.35 -2.8
522,707 - Dshi_0537 0.36 +0.0
522,756 + Dshi_0537 0.40 -0.3
522,769 - Dshi_0537 0.40 -0.3
522,774 - Dshi_0537 0.41 -0.9
522,774 - Dshi_0537 0.41 -2.1
522,869 + Dshi_0537 0.47 -2.1
522,869 + Dshi_0537 0.47 -0.4
522,916 + Dshi_0537 0.50 -0.2
522,936 + Dshi_0537 0.52 -0.1
522,942 - Dshi_0537 0.52 -0.4
522,944 - Dshi_0537 0.52 -1.6
522,944 - Dshi_0537 0.52 +1.0
523,027 - Dshi_0537 0.58 -0.5
523,106 + Dshi_0537 0.63 -1.2
523,142 + Dshi_0537 0.65 -0.8
523,176 - Dshi_0537 0.68 -1.4
523,215 + Dshi_0537 0.70 +0.6
523,215 + Dshi_0537 0.70 -2.1
523,223 - Dshi_0537 0.71 -0.8
523,223 - Dshi_0537 0.71 +0.4
523,223 - Dshi_0537 0.71 +0.5
523,274 + Dshi_0537 0.74 -1.4
523,303 - Dshi_0537 0.76 -0.3
523,393 + Dshi_0537 0.82 -0.5
523,393 + Dshi_0537 0.82 +0.5
523,544 + +0.1
523,544 + +0.6
523,552 - -0.2
523,552 - +0.1
523,574 + +0.8
523,584 + +0.1
523,597 - +0.2
523,609 - +0.6
523,640 - +0.6
523,752 - +0.0
523,753 - -0.2
523,754 + -0.2
523,762 - +0.4
523,766 - +0.2
523,813 + +0.2
523,813 - -2.0
524,540 - +0.2
524,572 + -1.2
524,577 + -0.4
524,595 - -1.3

Or see this region's nucleotide sequence