Experiment: m.b. Nalidixic 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0319 and Dshi_0320 are separated by 1 nucleotides Dshi_0320 and Dshi_0321 are separated by 15 nucleotides Dshi_0321 and Dshi_0322 are separated by 43 nucleotides
Dshi_0319: Dshi_0319 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 307,429 to 308,664
_0319
Dshi_0320: Dshi_0320 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 308,666 to 309,964
_0320
Dshi_0321: Dshi_0321 - ABC transporter related (RefSeq), at 309,980 to 310,756
_0321
Dshi_0322: Dshi_0322 - putative phosphohistidine phosphatase, SixA (RefSeq), at 310,800 to 311,300
_0322
Position (kb) 308
309
310 Strain fitness (log2 ratio) -2
-1
0
1
2 at 307.674 kb on + strand, within Dshi_0319 at 307.740 kb on - strand, within Dshi_0319 at 307.782 kb on + strand, within Dshi_0319 at 307.887 kb on - strand, within Dshi_0319 at 307.946 kb on - strand, within Dshi_0319 at 307.965 kb on - strand, within Dshi_0319 at 307.968 kb on - strand, within Dshi_0319 at 307.983 kb on - strand, within Dshi_0319 at 307.993 kb on + strand, within Dshi_0319 at 307.995 kb on + strand, within Dshi_0319 at 308.111 kb on + strand, within Dshi_0319 at 308.210 kb on + strand, within Dshi_0319 at 308.210 kb on + strand, within Dshi_0319 at 308.210 kb on + strand, within Dshi_0319 at 308.218 kb on - strand, within Dshi_0319 at 308.218 kb on - strand, within Dshi_0319 at 308.233 kb on - strand, within Dshi_0319 at 308.269 kb on + strand, within Dshi_0319 at 308.351 kb on - strand, within Dshi_0319 at 308.357 kb on - strand, within Dshi_0319 at 308.363 kb on - strand, within Dshi_0319 at 308.459 kb on + strand, within Dshi_0319 at 308.524 kb on - strand, within Dshi_0319 at 308.549 kb on - strand at 308.559 kb on - strand at 308.594 kb on - strand at 308.622 kb on + strand at 308.703 kb on - strand at 308.778 kb on + strand at 308.786 kb on - strand at 308.798 kb on - strand, within Dshi_0320 at 308.816 kb on + strand, within Dshi_0320 at 309.010 kb on - strand, within Dshi_0320 at 309.010 kb on - strand, within Dshi_0320 at 309.010 kb on - strand, within Dshi_0320 at 309.010 kb on - strand, within Dshi_0320 at 309.010 kb on - strand, within Dshi_0320 at 309.112 kb on + strand, within Dshi_0320 at 309.141 kb on - strand, within Dshi_0320 at 309.418 kb on + strand, within Dshi_0320 at 309.487 kb on - strand, within Dshi_0320 at 309.542 kb on + strand, within Dshi_0320 at 309.760 kb on + strand, within Dshi_0320 at 309.786 kb on - strand, within Dshi_0320 at 309.858 kb on + strand at 309.930 kb on + strand at 309.938 kb on - strand at 310.000 kb on - strand at 310.014 kb on + strand at 310.101 kb on + strand, within Dshi_0321 at 310.156 kb on + strand, within Dshi_0321 at 310.254 kb on + strand, within Dshi_0321 at 310.254 kb on + strand, within Dshi_0321 at 310.257 kb on - strand, within Dshi_0321 at 310.548 kb on - strand, within Dshi_0321
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.048 mg/ml remove 307,674 + Dshi_0319 0.20 -0.5 307,740 - Dshi_0319 0.25 +0.3 307,782 + Dshi_0319 0.29 -0.4 307,887 - Dshi_0319 0.37 -2.4 307,946 - Dshi_0319 0.42 -1.6 307,965 - Dshi_0319 0.43 -0.7 307,968 - Dshi_0319 0.44 -1.2 307,983 - Dshi_0319 0.45 -1.5 307,993 + Dshi_0319 0.46 -0.5 307,995 + Dshi_0319 0.46 -0.0 308,111 + Dshi_0319 0.55 +0.6 308,210 + Dshi_0319 0.63 +0.2 308,210 + Dshi_0319 0.63 -0.5 308,210 + Dshi_0319 0.63 -0.8 308,218 - Dshi_0319 0.64 -0.7 308,218 - Dshi_0319 0.64 -1.5 308,233 - Dshi_0319 0.65 -0.3 308,269 + Dshi_0319 0.68 -0.1 308,351 - Dshi_0319 0.75 -1.0 308,357 - Dshi_0319 0.75 -0.8 308,363 - Dshi_0319 0.76 -0.8 308,459 + Dshi_0319 0.83 +0.6 308,524 - Dshi_0319 0.89 +0.2 308,549 - +2.2 308,559 - -1.3 308,594 - -0.0 308,622 + -0.4 308,703 - +0.0 308,778 + +0.6 308,786 - +1.2 308,798 - Dshi_0320 0.10 -1.3 308,816 + Dshi_0320 0.12 +1.8 309,010 - Dshi_0320 0.26 +0.1 309,010 - Dshi_0320 0.26 -0.0 309,010 - Dshi_0320 0.26 -0.9 309,010 - Dshi_0320 0.26 -0.8 309,010 - Dshi_0320 0.26 +0.2 309,112 + Dshi_0320 0.34 +0.2 309,141 - Dshi_0320 0.37 -0.3 309,418 + Dshi_0320 0.58 -1.3 309,487 - Dshi_0320 0.63 -0.4 309,542 + Dshi_0320 0.67 +0.2 309,760 + Dshi_0320 0.84 -0.8 309,786 - Dshi_0320 0.86 -1.8 309,858 + -0.1 309,930 + -0.1 309,938 - -0.2 310,000 - -1.1 310,014 + -0.4 310,101 + Dshi_0321 0.16 +0.1 310,156 + Dshi_0321 0.23 -0.0 310,254 + Dshi_0321 0.35 -0.2 310,254 + Dshi_0321 0.35 -1.8 310,257 - Dshi_0321 0.36 -0.8 310,548 - Dshi_0321 0.73 +0.2
Or see this region's nucleotide sequence