Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06473

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06472 and H281DRAFT_06473 are separated by 38 nucleotidesH281DRAFT_06473 and H281DRAFT_06474 are separated by 331 nucleotides H281DRAFT_06472: H281DRAFT_06472 - hypothetical protein, at 9,458 to 10,009 _06472 H281DRAFT_06473: H281DRAFT_06473 - NTE family protein, at 10,048 to 11,001 _06473 H281DRAFT_06474: H281DRAFT_06474 - amino acid ABC transporter membrane protein 1, PAAT family, at 11,333 to 12,022 _06474 Position (kb) 10 11 12Strain fitness (log2 ratio) -1 0 1at 9.114 kb on + strandat 9.115 kb on - strandat 9.373 kb on + strandat 9.672 kb on - strand, within H281DRAFT_06472at 9.674 kb on - strand, within H281DRAFT_06472at 9.724 kb on + strand, within H281DRAFT_06472at 9.725 kb on - strand, within H281DRAFT_06472at 9.729 kb on - strand, within H281DRAFT_06472at 9.729 kb on - strand, within H281DRAFT_06472at 9.755 kb on - strandat 9.971 kb on + strandat 9.971 kb on + strandat 10.233 kb on - strand, within H281DRAFT_06473at 10.508 kb on + strand, within H281DRAFT_06473at 10.961 kb on - strandat 10.961 kb on - strandat 10.962 kb on + strandat 10.962 kb on + strandat 10.963 kb on - strandat 11.033 kb on + strandat 11.303 kb on - strandat 11.341 kb on - strandat 11.341 kb on - strandat 11.343 kb on - strandat 11.546 kb on - strand, within H281DRAFT_06474at 11.655 kb on - strand, within H281DRAFT_06474

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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9,114 + -0.3
9,115 - -0.1
9,373 + +1.1
9,672 - H281DRAFT_06472 0.39 -0.8
9,674 - H281DRAFT_06472 0.39 +0.2
9,724 + H281DRAFT_06472 0.48 -0.1
9,725 - H281DRAFT_06472 0.48 -0.7
9,729 - H281DRAFT_06472 0.49 -0.3
9,729 - H281DRAFT_06472 0.49 -0.0
9,755 - +1.5
9,971 + +1.4
9,971 + +0.7
10,233 - H281DRAFT_06473 0.19 -0.9
10,508 + H281DRAFT_06473 0.48 -0.9
10,961 - -0.4
10,961 - -1.1
10,962 + +0.2
10,962 + +0.7
10,963 - -1.5
11,033 + +0.5
11,303 - -0.2
11,341 - +1.2
11,341 - -0.6
11,343 - -0.3
11,546 - H281DRAFT_06474 0.31 +0.5
11,655 - H281DRAFT_06474 0.47 +0.4

Or see this region's nucleotide sequence