Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05881

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05880 and H281DRAFT_05881 are separated by 104 nucleotidesH281DRAFT_05881 and H281DRAFT_05882 are separated by 93 nucleotides H281DRAFT_05880: H281DRAFT_05880 - Aspartate/methionine/tyrosine aminotransferase, at 18,085 to 19,209 _05880 H281DRAFT_05881: H281DRAFT_05881 - D-amino-acid dehydrogenase, at 19,314 to 20,558 _05881 H281DRAFT_05882: H281DRAFT_05882 - amino acid ABC transporter substrate-binding protein, PAAT family, at 20,652 to 21,440 _05882 Position (kb) 19 20 21Strain fitness (log2 ratio) -1 0 1at 18.470 kb on - strand, within H281DRAFT_05880at 18.550 kb on - strand, within H281DRAFT_05880at 18.961 kb on + strand, within H281DRAFT_05880at 18.990 kb on - strand, within H281DRAFT_05880at 19.227 kb on + strandat 20.134 kb on + strandat 20.153 kb on + strand, within H281DRAFT_05881at 20.502 kb on + strandat 20.930 kb on - strand, within H281DRAFT_05882at 21.102 kb on + strand, within H281DRAFT_05882at 21.103 kb on - strand, within H281DRAFT_05882

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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18,470 - H281DRAFT_05880 0.34 -1.0
18,550 - H281DRAFT_05880 0.41 -0.1
18,961 + H281DRAFT_05880 0.78 +0.1
18,990 - H281DRAFT_05880 0.80 +0.7
19,227 + +0.1
20,134 + +0.7
20,153 + H281DRAFT_05881 0.67 -0.1
20,502 + +0.3
20,930 - H281DRAFT_05882 0.35 +0.1
21,102 + H281DRAFT_05882 0.57 -0.6
21,103 - H281DRAFT_05882 0.57 +0.6

Or see this region's nucleotide sequence