Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05106

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05104 and H281DRAFT_05105 are separated by 177 nucleotidesH281DRAFT_05105 and H281DRAFT_05106 are separated by 108 nucleotidesH281DRAFT_05106 and H281DRAFT_05107 are separated by 150 nucleotides H281DRAFT_05104: H281DRAFT_05104 - bacterial translation initiation factor 2 (bIF-2), at 48,448 to 51,393 _05104 H281DRAFT_05105: H281DRAFT_05105 - ribosome-binding factor A, at 51,571 to 51,936 _05105 H281DRAFT_05106: H281DRAFT_05106 - tRNA pseudouridine synthase B, at 52,045 to 52,980 _05106 H281DRAFT_05107: H281DRAFT_05107 - MFS transporter, DHA2 family, multidrug resistance protein, at 53,131 to 54,693 _05107 Position (kb) 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1at 52.007 kb on + strandat 52.007 kb on + strandat 52.007 kb on + strandat 52.008 kb on - strandat 52.008 kb on - strandat 52.026 kb on + strandat 52.027 kb on - strandat 52.159 kb on + strand, within H281DRAFT_05106at 52.159 kb on + strand, within H281DRAFT_05106at 52.160 kb on - strand, within H281DRAFT_05106at 52.160 kb on - strand, within H281DRAFT_05106at 52.160 kb on - strand, within H281DRAFT_05106at 52.182 kb on + strand, within H281DRAFT_05106at 52.182 kb on + strand, within H281DRAFT_05106at 52.182 kb on + strand, within H281DRAFT_05106at 52.183 kb on - strand, within H281DRAFT_05106at 52.430 kb on - strand, within H281DRAFT_05106at 52.462 kb on + strand, within H281DRAFT_05106at 52.462 kb on + strand, within H281DRAFT_05106at 52.468 kb on + strand, within H281DRAFT_05106at 52.588 kb on + strand, within H281DRAFT_05106at 52.588 kb on + strand, within H281DRAFT_05106at 52.589 kb on - strand, within H281DRAFT_05106at 52.589 kb on - strand, within H281DRAFT_05106at 52.589 kb on - strand, within H281DRAFT_05106at 52.589 kb on - strand, within H281DRAFT_05106at 52.589 kb on - strand, within H281DRAFT_05106at 52.589 kb on - strand, within H281DRAFT_05106at 52.643 kb on + strand, within H281DRAFT_05106at 52.644 kb on - strandat 52.786 kb on + strand, within H281DRAFT_05106at 52.786 kb on + strand, within H281DRAFT_05106at 52.786 kb on + strand, within H281DRAFT_05106at 52.978 kb on + strandat 52.978 kb on + strandat 53.078 kb on + strandat 53.079 kb on - strandat 53.079 kb on - strandat 53.298 kb on - strand, within H281DRAFT_05107at 53.457 kb on + strand, within H281DRAFT_05107at 53.458 kb on - strand, within H281DRAFT_05107at 53.595 kb on - strand, within H281DRAFT_05107at 53.598 kb on + strand, within H281DRAFT_05107at 53.614 kb on - strand, within H281DRAFT_05107at 53.614 kb on - strand, within H281DRAFT_05107at 53.614 kb on - strand, within H281DRAFT_05107at 53.614 kb on - strand, within H281DRAFT_05107at 53.614 kb on - strand, within H281DRAFT_05107at 53.648 kb on - strand, within H281DRAFT_05107at 53.670 kb on + strand, within H281DRAFT_05107at 53.671 kb on - strand, within H281DRAFT_05107at 53.672 kb on + strand, within H281DRAFT_05107at 53.774 kb on + strand, within H281DRAFT_05107at 53.825 kb on + strand, within H281DRAFT_05107at 53.826 kb on - strand, within H281DRAFT_05107at 53.977 kb on - strand, within H281DRAFT_05107

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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52,007 + +0.7
52,007 + -0.5
52,007 + +1.0
52,008 - -1.3
52,008 - -0.4
52,026 + +0.3
52,027 - +1.1
52,159 + H281DRAFT_05106 0.12 -0.8
52,159 + H281DRAFT_05106 0.12 -0.4
52,160 - H281DRAFT_05106 0.12 -0.3
52,160 - H281DRAFT_05106 0.12 -0.5
52,160 - H281DRAFT_05106 0.12 -2.2
52,182 + H281DRAFT_05106 0.15 -3.0
52,182 + H281DRAFT_05106 0.15 -0.7
52,182 + H281DRAFT_05106 0.15 +0.1
52,183 - H281DRAFT_05106 0.15 -1.5
52,430 - H281DRAFT_05106 0.41 -1.7
52,462 + H281DRAFT_05106 0.45 -0.6
52,462 + H281DRAFT_05106 0.45 -1.0
52,468 + H281DRAFT_05106 0.45 -1.5
52,588 + H281DRAFT_05106 0.58 -0.9
52,588 + H281DRAFT_05106 0.58 -1.5
52,589 - H281DRAFT_05106 0.58 -0.5
52,589 - H281DRAFT_05106 0.58 -0.8
52,589 - H281DRAFT_05106 0.58 -2.0
52,589 - H281DRAFT_05106 0.58 -0.8
52,589 - H281DRAFT_05106 0.58 -1.3
52,589 - H281DRAFT_05106 0.58 +0.0
52,643 + H281DRAFT_05106 0.64 -0.5
52,644 - -1.9
52,786 + H281DRAFT_05106 0.79 -0.3
52,786 + H281DRAFT_05106 0.79 -1.5
52,786 + H281DRAFT_05106 0.79 -1.1
52,978 + +0.6
52,978 + +0.2
53,078 + +0.8
53,079 - +0.1
53,079 - +0.3
53,298 - H281DRAFT_05107 0.11 +1.7
53,457 + H281DRAFT_05107 0.21 -0.4
53,458 - H281DRAFT_05107 0.21 +0.5
53,595 - H281DRAFT_05107 0.30 +0.8
53,598 + H281DRAFT_05107 0.30 +0.1
53,614 - H281DRAFT_05107 0.31 +0.7
53,614 - H281DRAFT_05107 0.31 +0.7
53,614 - H281DRAFT_05107 0.31 -0.7
53,614 - H281DRAFT_05107 0.31 -0.0
53,614 - H281DRAFT_05107 0.31 -0.3
53,648 - H281DRAFT_05107 0.33 -0.0
53,670 + H281DRAFT_05107 0.34 -0.5
53,671 - H281DRAFT_05107 0.35 +0.0
53,672 + H281DRAFT_05107 0.35 +1.1
53,774 + H281DRAFT_05107 0.41 -1.2
53,825 + H281DRAFT_05107 0.44 -1.0
53,826 - H281DRAFT_05107 0.44 -0.1
53,977 - H281DRAFT_05107 0.54 -0.2

Or see this region's nucleotide sequence