Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03600

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03598 and H281DRAFT_03599 are separated by 70 nucleotidesH281DRAFT_03599 and H281DRAFT_03600 overlap by 14 nucleotidesH281DRAFT_03600 and H281DRAFT_03601 are separated by 304 nucleotides H281DRAFT_03598: H281DRAFT_03598 - hypothetical protein, at 107,369 to 107,659 _03598 H281DRAFT_03599: H281DRAFT_03599 - Putative zinc-finger, at 107,730 to 107,933 _03599 H281DRAFT_03600: H281DRAFT_03600 - RNA polymerase sigma-70 factor, ECF subfamily, at 107,920 to 108,675 _03600 H281DRAFT_03601: H281DRAFT_03601 - hypothetical protein, at 108,980 to 109,111 _03601 Position (kb) 107 108 109Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 106.931 kb on + strandat 106.931 kb on + strandat 106.932 kb on - strandat 106.932 kb on - strandat 106.938 kb on + strandat 106.981 kb on + strandat 106.983 kb on + strandat 106.983 kb on + strandat 106.983 kb on + strandat 106.984 kb on - strandat 106.984 kb on - strandat 107.030 kb on - strandat 107.100 kb on - strandat 107.148 kb on - strandat 107.258 kb on + strandat 107.300 kb on + strandat 107.301 kb on - strandat 107.301 kb on - strandat 107.306 kb on - strandat 107.380 kb on - strandat 107.380 kb on - strandat 107.447 kb on + strand, within H281DRAFT_03598at 107.447 kb on + strand, within H281DRAFT_03598at 107.448 kb on - strand, within H281DRAFT_03598at 107.448 kb on - strand, within H281DRAFT_03598at 107.553 kb on + strand, within H281DRAFT_03598at 107.553 kb on + strand, within H281DRAFT_03598at 107.778 kb on - strand, within H281DRAFT_03599at 107.778 kb on - strand, within H281DRAFT_03599at 107.921 kb on + strandat 107.921 kb on + strandat 107.921 kb on + strandat 107.922 kb on - strandat 108.096 kb on + strand, within H281DRAFT_03600at 108.115 kb on + strand, within H281DRAFT_03600at 108.307 kb on - strand, within H281DRAFT_03600at 108.348 kb on + strand, within H281DRAFT_03600at 108.348 kb on + strand, within H281DRAFT_03600at 108.349 kb on - strand, within H281DRAFT_03600at 108.488 kb on + strand, within H281DRAFT_03600at 108.532 kb on - strand, within H281DRAFT_03600at 108.667 kb on - strandat 108.667 kb on - strandat 108.675 kb on + strandat 108.675 kb on + strandat 108.675 kb on + strandat 108.893 kb on - strandat 108.923 kb on - strandat 108.923 kb on - strandat 108.974 kb on - strandat 108.974 kb on - strandat 109.086 kb on - strand, within H281DRAFT_03601at 109.109 kb on + strandat 109.109 kb on + strandat 109.109 kb on + strandat 109.109 kb on + strandat 109.109 kb on + strandat 109.109 kb on + strandat 109.110 kb on - strandat 109.110 kb on - strandat 109.110 kb on - strandat 109.110 kb on - strandat 109.226 kb on - strandat 109.438 kb on + strandat 109.438 kb on + strandat 109.438 kb on + strandat 109.439 kb on - strandat 109.443 kb on + strandat 109.444 kb on - strandat 109.626 kb on + strandat 109.626 kb on + strandat 109.627 kb on - strandat 109.627 kb on - strandat 109.627 kb on - strandat 109.664 kb on + strandat 109.664 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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106,931 + -0.5
106,931 + -0.4
106,932 - -0.2
106,932 - -0.3
106,938 + -0.2
106,981 + +0.6
106,983 + +0.8
106,983 + -0.2
106,983 + +0.6
106,984 - +0.2
106,984 - +0.6
107,030 - +0.6
107,100 - +0.5
107,148 - -0.2
107,258 + -0.5
107,300 + +1.2
107,301 - +0.3
107,301 - +0.8
107,306 - +1.6
107,380 - -0.0
107,380 - +0.3
107,447 + H281DRAFT_03598 0.27 +0.6
107,447 + H281DRAFT_03598 0.27 +0.3
107,448 - H281DRAFT_03598 0.27 +0.3
107,448 - H281DRAFT_03598 0.27 +0.2
107,553 + H281DRAFT_03598 0.63 -0.1
107,553 + H281DRAFT_03598 0.63 +0.3
107,778 - H281DRAFT_03599 0.24 +0.8
107,778 - H281DRAFT_03599 0.24 +0.3
107,921 + +0.0
107,921 + -1.0
107,921 + -0.3
107,922 - +0.1
108,096 + H281DRAFT_03600 0.23 +0.1
108,115 + H281DRAFT_03600 0.26 -0.2
108,307 - H281DRAFT_03600 0.51 -0.1
108,348 + H281DRAFT_03600 0.57 +0.1
108,348 + H281DRAFT_03600 0.57 -0.9
108,349 - H281DRAFT_03600 0.57 -0.4
108,488 + H281DRAFT_03600 0.75 -0.0
108,532 - H281DRAFT_03600 0.81 -0.7
108,667 - +0.4
108,667 - +0.5
108,675 + +0.0
108,675 + +0.3
108,675 + +0.0
108,893 - -4.1
108,923 - -1.2
108,923 - -1.7
108,974 - -2.2
108,974 - -4.4
109,086 - H281DRAFT_03601 0.80 -2.3
109,109 + -0.0
109,109 + -1.6
109,109 + -0.5
109,109 + -0.7
109,109 + -0.4
109,109 + -1.4
109,110 - -0.4
109,110 - -0.8
109,110 - -0.7
109,110 - -0.5
109,226 - -0.9
109,438 + +0.1
109,438 + +0.6
109,438 + -0.2
109,439 - -0.9
109,443 + -0.2
109,444 - -0.1
109,626 + -1.2
109,626 + +0.4
109,627 - -0.1
109,627 - +0.2
109,627 - -0.3
109,664 + -0.6
109,664 + +0.0

Or see this region's nucleotide sequence