Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02246

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02245 and H281DRAFT_02246 are separated by 343 nucleotidesH281DRAFT_02246 and H281DRAFT_02247 are separated by 373 nucleotides H281DRAFT_02245: H281DRAFT_02245 - transcriptional regulator, LysR family, at 391,481 to 392,584 _02245 H281DRAFT_02246: H281DRAFT_02246 - phosphoenolpyruvate carboxykinase (GTP), at 392,928 to 394,796 _02246 H281DRAFT_02247: H281DRAFT_02247 - D-3-phosphoglycerate dehydrogenase, at 395,170 to 396,183 _02247 Position (kb) 392 393 394 395Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 391.972 kb on + strand, within H281DRAFT_02245at 391.977 kb on - strand, within H281DRAFT_02245at 391.995 kb on + strand, within H281DRAFT_02245at 391.995 kb on + strand, within H281DRAFT_02245at 391.995 kb on + strand, within H281DRAFT_02245at 391.995 kb on + strand, within H281DRAFT_02245at 391.996 kb on - strand, within H281DRAFT_02245at 392.070 kb on + strand, within H281DRAFT_02245at 392.244 kb on + strand, within H281DRAFT_02245at 392.244 kb on + strand, within H281DRAFT_02245at 392.245 kb on - strand, within H281DRAFT_02245at 392.309 kb on - strand, within H281DRAFT_02245at 392.392 kb on - strand, within H281DRAFT_02245at 392.392 kb on - strand, within H281DRAFT_02245at 392.453 kb on + strand, within H281DRAFT_02245at 392.503 kb on + strandat 392.503 kb on + strandat 392.584 kb on + strandat 392.584 kb on + strandat 392.585 kb on - strandat 392.585 kb on - strandat 392.604 kb on + strandat 392.604 kb on + strandat 392.645 kb on + strandat 392.645 kb on + strandat 392.646 kb on - strandat 392.646 kb on - strandat 392.657 kb on + strandat 392.657 kb on + strandat 392.731 kb on + strandat 392.731 kb on + strandat 392.813 kb on + strandat 392.813 kb on + strandat 392.814 kb on - strandat 393.115 kb on + strand, within H281DRAFT_02246at 393.328 kb on + strand, within H281DRAFT_02246at 393.329 kb on - strand, within H281DRAFT_02246at 393.442 kb on + strand, within H281DRAFT_02246at 393.443 kb on - strand, within H281DRAFT_02246at 393.443 kb on - strand, within H281DRAFT_02246at 393.443 kb on - strand, within H281DRAFT_02246at 393.561 kb on - strand, within H281DRAFT_02246at 393.818 kb on - strand, within H281DRAFT_02246at 393.841 kb on + strand, within H281DRAFT_02246at 393.978 kb on + strand, within H281DRAFT_02246at 393.979 kb on - strand, within H281DRAFT_02246at 394.126 kb on + strand, within H281DRAFT_02246at 394.127 kb on - strand, within H281DRAFT_02246at 394.127 kb on - strand, within H281DRAFT_02246at 394.127 kb on - strand, within H281DRAFT_02246at 394.165 kb on + strand, within H281DRAFT_02246at 394.165 kb on + strand, within H281DRAFT_02246at 394.165 kb on + strand, within H281DRAFT_02246at 394.165 kb on + strand, within H281DRAFT_02246at 394.165 kb on + strand, within H281DRAFT_02246at 394.165 kb on + strand, within H281DRAFT_02246at 394.166 kb on - strand, within H281DRAFT_02246at 394.166 kb on - strand, within H281DRAFT_02246at 394.166 kb on - strand, within H281DRAFT_02246at 394.166 kb on - strand, within H281DRAFT_02246at 394.166 kb on - strand, within H281DRAFT_02246at 394.166 kb on - strandat 394.166 kb on - strand, within H281DRAFT_02246at 394.166 kb on - strand, within H281DRAFT_02246at 394.166 kb on - strand, within H281DRAFT_02246at 394.273 kb on + strand, within H281DRAFT_02246at 394.274 kb on - strand, within H281DRAFT_02246at 394.274 kb on - strand, within H281DRAFT_02246at 394.321 kb on + strand, within H281DRAFT_02246at 394.321 kb on + strand, within H281DRAFT_02246at 394.322 kb on - strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.396 kb on + strand, within H281DRAFT_02246at 394.397 kb on - strand, within H281DRAFT_02246at 394.397 kb on - strand, within H281DRAFT_02246at 394.397 kb on - strand, within H281DRAFT_02246at 394.397 kb on - strand, within H281DRAFT_02246at 394.475 kb on + strand, within H281DRAFT_02246at 394.565 kb on - strand, within H281DRAFT_02246at 394.639 kb on + strandat 394.640 kb on - strandat 394.640 kb on - strandat 394.749 kb on + strandat 394.749 kb on + strandat 394.750 kb on - strandat 394.750 kb on - strandat 394.814 kb on + strandat 394.815 kb on - strandat 394.815 kb on - strandat 394.815 kb on - strandat 394.833 kb on - strandat 394.866 kb on + strandat 394.975 kb on + strandat 395.008 kb on + strandat 395.050 kb on - strandat 395.050 kb on - strandat 395.064 kb on - strandat 395.064 kb on - strandat 395.124 kb on + strandat 395.124 kb on + strandat 395.124 kb on + strandat 395.125 kb on - strandat 395.125 kb on - strandat 395.166 kb on + strandat 395.166 kb on + strandat 395.166 kb on + strandat 395.167 kb on - strandat 395.167 kb on - strandat 395.167 kb on - strandat 395.167 kb on - strandat 395.167 kb on - strandat 395.167 kb on - strandat 395.167 kb on - strandat 395.262 kb on + strandat 395.433 kb on + strand, within H281DRAFT_02247at 395.434 kb on - strand, within H281DRAFT_02247at 395.536 kb on + strand, within H281DRAFT_02247at 395.536 kb on + strand, within H281DRAFT_02247at 395.536 kb on + strand, within H281DRAFT_02247at 395.537 kb on - strand, within H281DRAFT_02247at 395.537 kb on - strand, within H281DRAFT_02247at 395.537 kb on - strand, within H281DRAFT_02247at 395.544 kb on + strand, within H281DRAFT_02247at 395.759 kb on - strand, within H281DRAFT_02247

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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391,972 + H281DRAFT_02245 0.44 -1.6
391,977 - H281DRAFT_02245 0.45 -2.7
391,995 + H281DRAFT_02245 0.47 -2.8
391,995 + H281DRAFT_02245 0.47 -1.4
391,995 + H281DRAFT_02245 0.47 -2.2
391,995 + H281DRAFT_02245 0.47 +0.2
391,996 - H281DRAFT_02245 0.47 -4.3
392,070 + H281DRAFT_02245 0.53 -0.8
392,244 + H281DRAFT_02245 0.69 -2.9
392,244 + H281DRAFT_02245 0.69 -4.1
392,245 - H281DRAFT_02245 0.69 -4.1
392,309 - H281DRAFT_02245 0.75 -4.7
392,392 - H281DRAFT_02245 0.83 -4.5
392,392 - H281DRAFT_02245 0.83 -3.1
392,453 + H281DRAFT_02245 0.88 -3.4
392,503 + -2.0
392,503 + +0.3
392,584 + -2.1
392,584 + -0.9
392,585 - -3.1
392,585 - -2.3
392,604 + -3.0
392,604 + -4.3
392,645 + -0.2
392,645 + -3.7
392,646 - -2.1
392,646 - -2.4
392,657 + -3.8
392,657 + -2.2
392,731 + -1.8
392,731 + -1.7
392,813 + -0.6
392,813 + +1.0
392,814 - +0.8
393,115 + H281DRAFT_02246 0.10 +0.6
393,328 + H281DRAFT_02246 0.21 -0.2
393,329 - H281DRAFT_02246 0.21 -0.8
393,442 + H281DRAFT_02246 0.28 +0.2
393,443 - H281DRAFT_02246 0.28 +2.1
393,443 - H281DRAFT_02246 0.28 +0.3
393,443 - H281DRAFT_02246 0.28 -0.0
393,561 - H281DRAFT_02246 0.34 +1.0
393,818 - H281DRAFT_02246 0.48 +0.1
393,841 + H281DRAFT_02246 0.49 -0.0
393,978 + H281DRAFT_02246 0.56 +1.0
393,979 - H281DRAFT_02246 0.56 +0.2
394,126 + H281DRAFT_02246 0.64 -0.0
394,127 - H281DRAFT_02246 0.64 +0.5
394,127 - H281DRAFT_02246 0.64 +0.2
394,127 - H281DRAFT_02246 0.64 +0.8
394,165 + H281DRAFT_02246 0.66 -1.0
394,165 + H281DRAFT_02246 0.66 +0.6
394,165 + H281DRAFT_02246 0.66 +0.5
394,165 + H281DRAFT_02246 0.66 +0.3
394,165 + H281DRAFT_02246 0.66 -0.1
394,165 + H281DRAFT_02246 0.66 +0.1
394,166 - H281DRAFT_02246 0.66 -0.4
394,166 - H281DRAFT_02246 0.66 +0.3
394,166 - H281DRAFT_02246 0.66 +0.1
394,166 - H281DRAFT_02246 0.66 +0.3
394,166 - H281DRAFT_02246 0.66 +0.3
394,166 - +0.3
394,166 - H281DRAFT_02246 0.66 -0.3
394,166 - H281DRAFT_02246 0.66 +0.4
394,166 - H281DRAFT_02246 0.66 +0.5
394,273 + H281DRAFT_02246 0.72 +0.2
394,274 - H281DRAFT_02246 0.72 -1.0
394,274 - H281DRAFT_02246 0.72 +0.2
394,321 + H281DRAFT_02246 0.75 -1.4
394,321 + H281DRAFT_02246 0.75 +0.0
394,322 - H281DRAFT_02246 0.75 +0.1
394,396 + H281DRAFT_02246 0.79 +0.6
394,396 + H281DRAFT_02246 0.79 +0.2
394,396 + H281DRAFT_02246 0.79 +0.1
394,396 + H281DRAFT_02246 0.79 +0.6
394,396 + H281DRAFT_02246 0.79 +0.2
394,396 + H281DRAFT_02246 0.79 +0.4
394,396 + H281DRAFT_02246 0.79 +0.9
394,396 + H281DRAFT_02246 0.79 +0.8
394,396 + H281DRAFT_02246 0.79 +0.8
394,396 + H281DRAFT_02246 0.79 +0.2
394,396 + H281DRAFT_02246 0.79 +0.1
394,397 - H281DRAFT_02246 0.79 +0.2
394,397 - H281DRAFT_02246 0.79 +0.9
394,397 - H281DRAFT_02246 0.79 +0.2
394,397 - H281DRAFT_02246 0.79 -0.0
394,475 + H281DRAFT_02246 0.83 +0.2
394,565 - H281DRAFT_02246 0.88 +1.7
394,639 + -0.3
394,640 - +0.2
394,640 - +0.0
394,749 + +0.2
394,749 + -0.2
394,750 - -0.7
394,750 - -0.2
394,814 + -0.0
394,815 - +0.2
394,815 - -1.2
394,815 - +0.4
394,833 - +0.3
394,866 + +0.5
394,975 + +0.4
395,008 + +0.5
395,050 - -0.2
395,050 - -0.1
395,064 - -1.3
395,064 - -0.4
395,124 + +0.5
395,124 + +1.1
395,124 + +1.9
395,125 - -0.1
395,125 - +0.5
395,166 + +0.2
395,166 + +1.1
395,166 + +0.1
395,167 - +0.6
395,167 - -0.8
395,167 - -0.2
395,167 - -0.6
395,167 - +0.0
395,167 - +0.1
395,167 - +0.4
395,262 + +0.4
395,433 + H281DRAFT_02247 0.26 +1.2
395,434 - H281DRAFT_02247 0.26 -0.1
395,536 + H281DRAFT_02247 0.36 +0.2
395,536 + H281DRAFT_02247 0.36 +0.3
395,536 + H281DRAFT_02247 0.36 +0.5
395,537 - H281DRAFT_02247 0.36 -0.1
395,537 - H281DRAFT_02247 0.36 +0.2
395,537 - H281DRAFT_02247 0.36 +0.3
395,544 + H281DRAFT_02247 0.37 +0.0
395,759 - H281DRAFT_02247 0.58 +0.3

Or see this region's nucleotide sequence