Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01344

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01343 and H281DRAFT_01344 are separated by 72 nucleotidesH281DRAFT_01344 and H281DRAFT_01345 are separated by 28 nucleotides H281DRAFT_01343: H281DRAFT_01343 - 3-methylcrotonoyl-CoA carboxylase, alpha subunit, at 183,959 to 185,992 _01343 H281DRAFT_01344: H281DRAFT_01344 - methylglutaconyl-CoA hydratase, at 186,065 to 186,850 _01344 H281DRAFT_01345: H281DRAFT_01345 - 3-methylcrotonyl-CoA carboxylase beta subunit, at 186,879 to 188,486 _01345 Position (kb) 186 187Strain fitness (log2 ratio) -2 -1 0 1at 185.389 kb on - strand, within H281DRAFT_01343at 186.843 kb on + strandat 186.905 kb on + strandat 186.906 kb on - strandat 187.010 kb on - strandat 187.012 kb on + strandat 187.033 kb on + strandat 187.034 kb on - strandat 187.222 kb on + strand, within H281DRAFT_01345at 187.374 kb on + strand, within H281DRAFT_01345at 187.487 kb on + strand, within H281DRAFT_01345at 187.487 kb on + strand, within H281DRAFT_01345at 187.619 kb on - strand, within H281DRAFT_01345at 187.637 kb on - strand, within H281DRAFT_01345at 187.772 kb on + strand, within H281DRAFT_01345at 187.773 kb on - strand, within H281DRAFT_01345at 187.773 kb on - strand, within H281DRAFT_01345at 187.773 kb on - strand, within H281DRAFT_01345at 187.773 kb on - strand, within H281DRAFT_01345

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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185,389 - H281DRAFT_01343 0.70 +0.1
186,843 + -1.6
186,905 + -1.4
186,906 - -0.5
187,010 - -1.7
187,012 + -1.4
187,033 + -1.3
187,034 - +0.2
187,222 + H281DRAFT_01345 0.21 -0.6
187,374 + H281DRAFT_01345 0.31 -0.4
187,487 + H281DRAFT_01345 0.38 -1.0
187,487 + H281DRAFT_01345 0.38 -0.2
187,619 - H281DRAFT_01345 0.46 +0.3
187,637 - H281DRAFT_01345 0.47 -0.4
187,772 + H281DRAFT_01345 0.56 -0.5
187,773 - H281DRAFT_01345 0.56 -1.8
187,773 - H281DRAFT_01345 0.56 -1.1
187,773 - H281DRAFT_01345 0.56 -0.9
187,773 - H281DRAFT_01345 0.56 +0.1

Or see this region's nucleotide sequence