Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00300

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00298 and H281DRAFT_00299 are separated by 264 nucleotidesH281DRAFT_00299 and H281DRAFT_00300 are separated by 275 nucleotidesH281DRAFT_00300 and H281DRAFT_00301 are separated by 187 nucleotides H281DRAFT_00298: H281DRAFT_00298 - hypothetical protein, at 319,339 to 319,584 _00298 H281DRAFT_00299: H281DRAFT_00299 - Protein of unknown function (DUF3096), at 319,849 to 320,001 _00299 H281DRAFT_00300: H281DRAFT_00300 - 6-phosphogluconolactonase, at 320,277 to 321,581 _00300 H281DRAFT_00301: H281DRAFT_00301 - DNA translocase FtsK, at 321,769 to 325,794 _00301 Position (kb) 320 321 322Strain fitness (log2 ratio) -1 0 1at 319.522 kb on + strand, within H281DRAFT_00298at 319.523 kb on - strand, within H281DRAFT_00298at 319.523 kb on - strand, within H281DRAFT_00298at 319.657 kb on + strandat 319.658 kb on - strandat 319.658 kb on - strandat 319.658 kb on - strandat 319.816 kb on + strandat 319.905 kb on - strand, within H281DRAFT_00299at 319.917 kb on + strand, within H281DRAFT_00299at 319.919 kb on + strand, within H281DRAFT_00299at 319.919 kb on + strand, within H281DRAFT_00299at 319.919 kb on + strand, within H281DRAFT_00299at 319.919 kb on + strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.951 kb on + strand, within H281DRAFT_00299at 319.952 kb on - strand, within H281DRAFT_00299at 320.005 kb on + strandat 320.006 kb on - strandat 320.012 kb on + strandat 320.024 kb on - strandat 320.114 kb on - strandat 320.179 kb on + strandat 320.179 kb on + strandat 320.180 kb on - strandat 320.181 kb on + strandat 320.181 kb on + strandat 320.182 kb on - strandat 320.182 kb on - strandat 320.194 kb on + strandat 320.194 kb on + strandat 320.195 kb on - strandat 320.237 kb on - strandat 320.237 kb on - strandat 320.237 kb on - strandat 320.256 kb on - strandat 320.264 kb on + strandat 320.274 kb on + strandat 320.275 kb on - strandat 320.276 kb on + strandat 320.276 kb on + strandat 320.276 kb on + strandat 320.276 kb on + strandat 320.276 kb on + strandat 320.277 kb on - strandat 320.277 kb on - strandat 320.277 kb on - strandat 320.277 kb on - strandat 320.277 kb on - strandat 320.277 kb on - strandat 320.321 kb on + strandat 320.322 kb on - strandat 320.338 kb on - strandat 320.408 kb on - strand, within H281DRAFT_00300at 320.408 kb on - strand, within H281DRAFT_00300at 320.491 kb on - strand, within H281DRAFT_00300at 320.511 kb on + strand, within H281DRAFT_00300at 320.511 kb on + strand, within H281DRAFT_00300at 320.512 kb on - strand, within H281DRAFT_00300at 320.512 kb on - strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.610 kb on + strand, within H281DRAFT_00300at 320.611 kb on - strand, within H281DRAFT_00300at 320.611 kb on - strand, within H281DRAFT_00300at 320.643 kb on + strand, within H281DRAFT_00300at 320.778 kb on + strand, within H281DRAFT_00300at 320.778 kb on + strand, within H281DRAFT_00300at 320.779 kb on - strand, within H281DRAFT_00300at 320.805 kb on + strand, within H281DRAFT_00300at 320.805 kb on + strand, within H281DRAFT_00300at 320.805 kb on + strand, within H281DRAFT_00300at 320.806 kb on - strand, within H281DRAFT_00300at 320.992 kb on - strand, within H281DRAFT_00300at 321.027 kb on + strand, within H281DRAFT_00300at 321.027 kb on + strand, within H281DRAFT_00300at 321.027 kb on + strand, within H281DRAFT_00300at 321.027 kb on + strand, within H281DRAFT_00300at 321.028 kb on - strand, within H281DRAFT_00300at 321.028 kb on - strand, within H281DRAFT_00300at 321.087 kb on + strand, within H281DRAFT_00300at 321.087 kb on + strand, within H281DRAFT_00300at 321.087 kb on + strand, within H281DRAFT_00300at 321.088 kb on - strand, within H281DRAFT_00300at 321.089 kb on + strand, within H281DRAFT_00300at 321.090 kb on - strand, within H281DRAFT_00300at 321.153 kb on + strand, within H281DRAFT_00300at 321.195 kb on + strand, within H281DRAFT_00300at 321.196 kb on - strand, within H281DRAFT_00300at 321.307 kb on - strand, within H281DRAFT_00300at 321.307 kb on - strand, within H281DRAFT_00300at 321.307 kb on - strand, within H281DRAFT_00300at 321.480 kb on + strandat 321.480 kb on + strandat 321.480 kb on + strandat 321.480 kb on + strandat 321.601 kb on - strandat 321.648 kb on + strandat 321.649 kb on - strandat 321.649 kb on - strandat 321.700 kb on + strandat 321.701 kb on - strandat 321.701 kb on - strandat 321.873 kb on + strandat 321.873 kb on + strandat 321.875 kb on + strandat 321.876 kb on - strandat 322.074 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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319,522 + H281DRAFT_00298 0.74 -0.5
319,523 - H281DRAFT_00298 0.75 -0.1
319,523 - H281DRAFT_00298 0.75 -0.4
319,657 + +0.1
319,658 - -0.5
319,658 - +0.2
319,658 - -1.4
319,816 + -0.2
319,905 - H281DRAFT_00299 0.37 -0.0
319,917 + H281DRAFT_00299 0.44 +0.9
319,919 + H281DRAFT_00299 0.46 -0.0
319,919 + H281DRAFT_00299 0.46 -0.3
319,919 + H281DRAFT_00299 0.46 +0.3
319,919 + H281DRAFT_00299 0.46 +0.4
319,920 - H281DRAFT_00299 0.46 +0.3
319,920 - H281DRAFT_00299 0.46 +0.4
319,920 - H281DRAFT_00299 0.46 -0.3
319,920 - H281DRAFT_00299 0.46 +0.1
319,920 - H281DRAFT_00299 0.46 -1.3
319,920 - H281DRAFT_00299 0.46 -0.3
319,951 + H281DRAFT_00299 0.67 -0.4
319,952 - H281DRAFT_00299 0.67 -0.2
320,005 + -0.8
320,006 - -0.3
320,012 + -0.1
320,024 - +0.1
320,114 - +0.6
320,179 + +1.4
320,179 + -0.1
320,180 - +0.1
320,181 + -0.2
320,181 + -0.9
320,182 - +0.8
320,182 - +0.3
320,194 + +0.2
320,194 + -1.1
320,195 - +0.1
320,237 - -0.9
320,237 - +0.7
320,237 - +0.3
320,256 - -0.1
320,264 + -0.2
320,274 + +0.2
320,275 - +0.3
320,276 + +0.3
320,276 + -0.3
320,276 + +0.2
320,276 + -0.8
320,276 + -0.9
320,277 - +0.4
320,277 - +0.8
320,277 - +0.3
320,277 - -0.3
320,277 - +0.9
320,277 - +0.2
320,321 + +0.4
320,322 - -0.1
320,338 - +0.3
320,408 - H281DRAFT_00300 0.10 +0.5
320,408 - H281DRAFT_00300 0.10 +0.5
320,491 - H281DRAFT_00300 0.16 -0.3
320,511 + H281DRAFT_00300 0.18 -0.4
320,511 + H281DRAFT_00300 0.18 +0.3
320,512 - H281DRAFT_00300 0.18 +0.4
320,512 - H281DRAFT_00300 0.18 +0.6
320,538 + H281DRAFT_00300 0.20 +0.0
320,538 + H281DRAFT_00300 0.20 -0.3
320,538 + H281DRAFT_00300 0.20 +0.5
320,538 + H281DRAFT_00300 0.20 -0.1
320,538 + H281DRAFT_00300 0.20 +0.6
320,538 + H281DRAFT_00300 0.20 +0.2
320,538 + H281DRAFT_00300 0.20 +0.3
320,538 + H281DRAFT_00300 0.20 +0.2
320,538 + H281DRAFT_00300 0.20 +0.5
320,538 + H281DRAFT_00300 0.20 +0.3
320,538 + H281DRAFT_00300 0.20 +0.3
320,539 - H281DRAFT_00300 0.20 +0.2
320,539 - H281DRAFT_00300 0.20 +0.4
320,539 - H281DRAFT_00300 0.20 +0.0
320,539 - H281DRAFT_00300 0.20 +0.8
320,539 - H281DRAFT_00300 0.20 +0.8
320,539 - H281DRAFT_00300 0.20 +0.2
320,539 - H281DRAFT_00300 0.20 -0.0
320,539 - H281DRAFT_00300 0.20 +0.4
320,539 - H281DRAFT_00300 0.20 +0.3
320,610 + H281DRAFT_00300 0.26 -0.1
320,611 - H281DRAFT_00300 0.26 +0.1
320,611 - H281DRAFT_00300 0.26 +0.0
320,643 + H281DRAFT_00300 0.28 +0.7
320,778 + H281DRAFT_00300 0.38 +0.3
320,778 + H281DRAFT_00300 0.38 -0.1
320,779 - H281DRAFT_00300 0.38 +0.1
320,805 + H281DRAFT_00300 0.40 +0.1
320,805 + H281DRAFT_00300 0.40 +0.0
320,805 + H281DRAFT_00300 0.40 +0.6
320,806 - H281DRAFT_00300 0.41 -0.1
320,992 - H281DRAFT_00300 0.55 +0.1
321,027 + H281DRAFT_00300 0.57 +1.6
321,027 + H281DRAFT_00300 0.57 +0.1
321,027 + H281DRAFT_00300 0.57 +0.5
321,027 + H281DRAFT_00300 0.57 -0.3
321,028 - H281DRAFT_00300 0.58 -0.8
321,028 - H281DRAFT_00300 0.58 +1.1
321,087 + H281DRAFT_00300 0.62 +0.4
321,087 + H281DRAFT_00300 0.62 -0.6
321,087 + H281DRAFT_00300 0.62 -0.0
321,088 - H281DRAFT_00300 0.62 -0.0
321,089 + H281DRAFT_00300 0.62 -0.7
321,090 - H281DRAFT_00300 0.62 +0.3
321,153 + H281DRAFT_00300 0.67 +0.2
321,195 + H281DRAFT_00300 0.70 -0.6
321,196 - H281DRAFT_00300 0.70 +0.3
321,307 - H281DRAFT_00300 0.79 -0.0
321,307 - H281DRAFT_00300 0.79 -1.0
321,307 - H281DRAFT_00300 0.79 +0.5
321,480 + +0.4
321,480 + +0.7
321,480 + -0.1
321,480 + +0.3
321,601 - -0.1
321,648 + -0.5
321,649 - -0.3
321,649 - +0.6
321,700 + +0.7
321,701 - +0.4
321,701 - -0.0
321,873 + -0.9
321,873 + +0.8
321,875 + -0.5
321,876 - -0.0
322,074 - +0.5

Or see this region's nucleotide sequence