Strain Fitness in Dechlorosoma suillum PS around Dsui_3419

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3417 and Dsui_3418 overlap by 8 nucleotidesDsui_3418 and Dsui_3419 are separated by 109 nucleotidesDsui_3419 and Dsui_3421 are separated by 385 nucleotides Dsui_3417: Dsui_3417 - hypothetical protein, at 3,669,933 to 3,670,328 _3417 Dsui_3418: Dsui_3418 - putative permease, at 3,670,321 to 3,671,055 _3418 Dsui_3419: Dsui_3419 - transcriptional regulator, at 3,671,165 to 3,672,064 _3419 Dsui_3421: Dsui_3421 - putative glycerate kinase, at 3,672,450 to 3,673,769 _3421 Position (kb) 3671 3672 3673Strain fitness (log2 ratio) -2 -1 0 1at 3670.254 kb on + strandat 3670.272 kb on - strandat 3670.311 kb on - strandat 3670.418 kb on - strandat 3670.494 kb on + strandat 3670.685 kb on - strand, within Dsui_3418at 3670.770 kb on + strandat 3670.824 kb on + strandat 3670.845 kb on + strand, within Dsui_3418at 3670.853 kb on - strandat 3670.880 kb on - strandat 3670.913 kb on + strandat 3670.939 kb on - strandat 3670.972 kb on + strand, within Dsui_3418at 3671.163 kb on - strandat 3671.240 kb on - strandat 3671.377 kb on + strandat 3671.388 kb on + strand, within Dsui_3419at 3671.476 kb on - strand, within Dsui_3419at 3671.480 kb on - strandat 3671.736 kb on + strand, within Dsui_3419at 3671.756 kb on - strandat 3671.756 kb on - strand, within Dsui_3419at 3671.756 kb on - strand, within Dsui_3419at 3671.922 kb on + strandat 3671.942 kb on + strand, within Dsui_3419at 3672.010 kb on - strandat 3672.099 kb on + strandat 3672.108 kb on - strandat 3672.120 kb on + strandat 3672.129 kb on + strandat 3672.188 kb on + strandat 3672.191 kb on - strandat 3672.191 kb on - strandat 3672.250 kb on - strandat 3672.393 kb on - strandat 3672.504 kb on + strandat 3672.719 kb on + strandat 3672.759 kb on + strandat 3672.858 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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3,670,254 + +0.7
3,670,272 - +0.7
3,670,311 - -0.8
3,670,418 - +0.7
3,670,494 + -0.3
3,670,685 - Dsui_3418 0.50 -1.3
3,670,770 + -1.8
3,670,824 + +0.7
3,670,845 + Dsui_3418 0.71 -1.8
3,670,853 - -1.3
3,670,880 - +0.7
3,670,913 + -0.3
3,670,939 - -0.3
3,670,972 + Dsui_3418 0.89 -1.3
3,671,163 - +0.7
3,671,240 - -0.3
3,671,377 + +0.7
3,671,388 + Dsui_3419 0.25 +0.7
3,671,476 - Dsui_3419 0.35 -1.9
3,671,480 - -0.3
3,671,736 + Dsui_3419 0.63 -2.1
3,671,756 - -0.3
3,671,756 - Dsui_3419 0.66 -0.8
3,671,756 - Dsui_3419 0.66 -2.3
3,671,922 + +0.7
3,671,942 + Dsui_3419 0.86 -1.3
3,672,010 - +0.7
3,672,099 + +0.7
3,672,108 - +0.7
3,672,120 + +0.7
3,672,129 + -0.3
3,672,188 + -0.8
3,672,191 - -0.3
3,672,191 - -0.8
3,672,250 - -0.3
3,672,393 - -0.8
3,672,504 + +0.7
3,672,719 + -1.6
3,672,759 + +0.7
3,672,858 + +0.7

Or see this region's nucleotide sequence