Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3348 and Dsui_3349 overlap by 1 nucleotides Dsui_3349 and Dsui_3350 are separated by 232 nucleotides Dsui_3350 and Dsui_3351 are separated by 52 nucleotides
Dsui_3348: Dsui_3348 - Zn-finger containing NTP pyrophosphohydrolase, at 3,587,909 to 3,588,412
_3348
Dsui_3349: Dsui_3349 - hypothetical protein, at 3,588,412 to 3,588,723
_3349
Dsui_3350: Dsui_3350 - hypothetical protein, at 3,588,956 to 3,589,264
_3350
Dsui_3351: Dsui_3351 - cytochrome c peroxidase, at 3,589,317 to 3,590,636
_3351
Position (kb)
3588
3589
3590 Strain fitness (log2 ratio)
-1
0
1 at 3588.098 kb on - strand, within Dsui_3348 at 3588.195 kb on + strand, within Dsui_3348 at 3588.428 kb on - strand at 3588.434 kb on - strand at 3588.434 kb on - strand at 3588.491 kb on - strand, within Dsui_3349 at 3588.493 kb on + strand, within Dsui_3349 at 3588.591 kb on - strand, within Dsui_3349 at 3588.603 kb on + strand, within Dsui_3349 at 3588.688 kb on - strand, within Dsui_3349 at 3588.699 kb on - strand at 3588.704 kb on - strand at 3588.946 kb on + strand at 3589.026 kb on - strand, within Dsui_3350 at 3589.054 kb on + strand at 3589.062 kb on - strand at 3589.110 kb on + strand, within Dsui_3350 at 3589.184 kb on + strand, within Dsui_3350 at 3589.192 kb on - strand, within Dsui_3350 at 3589.258 kb on + strand at 3589.275 kb on + strand at 3589.380 kb on + strand at 3589.425 kb on - strand at 3589.430 kb on - strand at 3589.479 kb on + strand, within Dsui_3351 at 3589.626 kb on + strand at 3589.695 kb on + strand at 3589.810 kb on + strand at 3589.816 kb on - strand, within Dsui_3351 at 3589.865 kb on + strand at 3589.897 kb on - strand at 3589.940 kb on + strand, within Dsui_3351 at 3589.948 kb on - strand, within Dsui_3351 at 3589.948 kb on - strand at 3590.053 kb on + strand at 3590.075 kb on - strand, within Dsui_3351 at 3590.075 kb on - strand, within Dsui_3351 at 3590.103 kb on + strand at 3590.113 kb on + strand at 3590.148 kb on + strand at 3590.151 kb on - strand at 3590.181 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,588,098 - Dsui_3348 0.38 -0.3 3,588,195 + Dsui_3348 0.57 -1.3 3,588,428 - +0.1 3,588,434 - -1.3 3,588,434 - -0.6 3,588,491 - Dsui_3349 0.25 +1.2 3,588,493 + Dsui_3349 0.26 +0.7 3,588,591 - Dsui_3349 0.57 -0.9 3,588,603 + Dsui_3349 0.61 +0.7 3,588,688 - Dsui_3349 0.88 -0.9 3,588,699 - -0.9 3,588,704 - -0.3 3,588,946 + +0.7 3,589,026 - Dsui_3350 0.23 +0.7 3,589,054 + -0.3 3,589,062 - -0.3 3,589,110 + Dsui_3350 0.50 -0.9 3,589,184 + Dsui_3350 0.74 -1.3 3,589,192 - Dsui_3350 0.76 +0.7 3,589,258 + -0.3 3,589,275 + +0.7 3,589,380 + +0.7 3,589,425 - -0.3 3,589,430 - -0.3 3,589,479 + Dsui_3351 0.12 -0.9 3,589,626 + -0.3 3,589,695 + -1.3 3,589,810 + -0.3 3,589,816 - Dsui_3351 0.38 -0.3 3,589,865 + +0.7 3,589,897 - -0.9 3,589,940 + Dsui_3351 0.47 -1.6 3,589,948 - Dsui_3351 0.48 -1.6 3,589,948 - -0.3 3,590,053 + -0.9 3,590,075 - Dsui_3351 0.57 -0.9 3,590,075 - Dsui_3351 0.57 -0.9 3,590,103 + -0.9 3,590,113 + +0.7 3,590,148 + -0.3 3,590,151 - -0.3 3,590,181 - +0.7
Or see this region's nucleotide sequence