Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3285 and Dsui_3286 overlap by 4 nucleotides Dsui_3286 and Dsui_3287 are separated by 64 nucleotides
Dsui_3285: Dsui_3285 - histidine kinase,HAMP domain-containing protein,histidine kinase, at 3,525,688 to 3,527,817
_3285
Dsui_3286: Dsui_3286 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,527,814 to 3,529,199
_3286
Dsui_3287: Dsui_3287 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 3,529,264 to 3,530,448
_3287
Position (kb)
3527
3528
3529
3530 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3526.818 kb on - strand at 3526.916 kb on - strand, within Dsui_3285 at 3527.107 kb on - strand, within Dsui_3285 at 3527.117 kb on + strand at 3527.159 kb on + strand, within Dsui_3285 at 3527.179 kb on + strand at 3527.184 kb on + strand at 3527.187 kb on - strand, within Dsui_3285 at 3527.321 kb on - strand, within Dsui_3285 at 3527.336 kb on - strand, within Dsui_3285 at 3527.439 kb on + strand at 3527.439 kb on + strand at 3527.444 kb on + strand at 3527.447 kb on - strand, within Dsui_3285 at 3527.448 kb on + strand at 3527.556 kb on + strand at 3527.570 kb on - strand at 3527.618 kb on - strand at 3527.618 kb on - strand at 3527.618 kb on - strand at 3527.618 kb on - strand at 3527.618 kb on - strand at 3527.618 kb on - strand at 3527.655 kb on - strand at 3527.727 kb on + strand at 3527.849 kb on - strand at 3527.849 kb on - strand at 3527.865 kb on - strand at 3528.062 kb on - strand, within Dsui_3286 at 3528.075 kb on + strand at 3528.083 kb on - strand, within Dsui_3286 at 3528.083 kb on - strand at 3528.101 kb on + strand at 3528.109 kb on - strand, within Dsui_3286 at 3528.211 kb on - strand, within Dsui_3286 at 3528.263 kb on + strand at 3528.266 kb on - strand, within Dsui_3286 at 3528.467 kb on + strand at 3528.506 kb on - strand, within Dsui_3286 at 3528.506 kb on - strand, within Dsui_3286 at 3528.574 kb on + strand, within Dsui_3286 at 3528.636 kb on - strand, within Dsui_3286 at 3528.743 kb on - strand, within Dsui_3286 at 3528.936 kb on + strand at 3528.987 kb on - strand, within Dsui_3286 at 3528.998 kb on + strand, within Dsui_3286 at 3529.042 kb on - strand, within Dsui_3286 at 3529.042 kb on - strand, within Dsui_3286 at 3529.047 kb on - strand, within Dsui_3286 at 3529.069 kb on + strand at 3529.202 kb on - strand at 3529.268 kb on - strand at 3529.342 kb on + strand at 3529.343 kb on - strand at 3529.350 kb on - strand at 3529.452 kb on + strand at 3529.453 kb on - strand, within Dsui_3287 at 3529.460 kb on - strand, within Dsui_3287 at 3529.460 kb on - strand, within Dsui_3287 at 3529.638 kb on + strand at 3529.653 kb on - strand, within Dsui_3287 at 3529.676 kb on + strand at 3529.678 kb on + strand, within Dsui_3287 at 3529.705 kb on - strand, within Dsui_3287 at 3529.783 kb on + strand, within Dsui_3287 at 3529.809 kb on - strand at 3529.907 kb on - strand, within Dsui_3287 at 3529.908 kb on + strand, within Dsui_3287 at 3529.941 kb on + strand at 3530.024 kb on - strand, within Dsui_3287 at 3530.100 kb on - strand, within Dsui_3287 at 3530.106 kb on - strand, within Dsui_3287 at 3530.140 kb on + strand at 3530.166 kb on + strand at 3530.182 kb on + strand, within Dsui_3287 at 3530.198 kb on - strand, within Dsui_3287
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,526,818 - +0.8 3,526,916 - Dsui_3285 0.58 -0.2 3,527,107 - Dsui_3285 0.67 +0.8 3,527,117 + +0.8 3,527,159 + Dsui_3285 0.69 -2.0 3,527,179 + -1.2 3,527,184 + +0.8 3,527,187 - Dsui_3285 0.70 -1.1 3,527,321 - Dsui_3285 0.77 -0.2 3,527,336 - Dsui_3285 0.77 -0.5 3,527,439 + +0.8 3,527,439 + -0.2 3,527,444 + -0.8 3,527,447 - Dsui_3285 0.83 -0.2 3,527,448 + -0.2 3,527,556 + -0.2 3,527,570 - +0.8 3,527,618 - +0.8 3,527,618 - -2.8 3,527,618 - +0.8 3,527,618 - -0.8 3,527,618 - -0.8 3,527,618 - -0.8 3,527,655 - +1.3 3,527,727 + +0.8 3,527,849 - -0.8 3,527,849 - -0.5 3,527,865 - -0.6 3,528,062 - Dsui_3286 0.18 -1.6 3,528,075 + -0.2 3,528,083 - Dsui_3286 0.19 -0.6 3,528,083 - -0.2 3,528,101 + -0.8 3,528,109 - Dsui_3286 0.21 +0.8 3,528,211 - Dsui_3286 0.29 +0.5 3,528,263 + +0.8 3,528,266 - Dsui_3286 0.33 -0.1 3,528,467 + -0.2 3,528,506 - Dsui_3286 0.50 -0.5 3,528,506 - Dsui_3286 0.50 -2.4 3,528,574 + Dsui_3286 0.55 -0.2 3,528,636 - Dsui_3286 0.59 -1.2 3,528,743 - Dsui_3286 0.67 -2.2 3,528,936 + +0.8 3,528,987 - Dsui_3286 0.85 -1.6 3,528,998 + Dsui_3286 0.85 +0.8 3,529,042 - Dsui_3286 0.89 -2.6 3,529,042 - Dsui_3286 0.89 +2.3 3,529,047 - Dsui_3286 0.89 -2.0 3,529,069 + +0.8 3,529,202 - -1.1 3,529,268 - -0.5 3,529,342 + -0.2 3,529,343 - -0.2 3,529,350 - -1.2 3,529,452 + +0.8 3,529,453 - Dsui_3287 0.16 -0.8 3,529,460 - Dsui_3287 0.17 +0.8 3,529,460 - Dsui_3287 0.17 -0.2 3,529,638 + +0.8 3,529,653 - Dsui_3287 0.33 -0.2 3,529,676 + -0.2 3,529,678 + Dsui_3287 0.35 -0.2 3,529,705 - Dsui_3287 0.37 -0.8 3,529,783 + Dsui_3287 0.44 -1.6 3,529,809 - +0.8 3,529,907 - Dsui_3287 0.54 -1.6 3,529,908 + Dsui_3287 0.54 -0.8 3,529,941 + -0.2 3,530,024 - Dsui_3287 0.64 +0.8 3,530,100 - Dsui_3287 0.71 +0.8 3,530,106 - Dsui_3287 0.71 -0.2 3,530,140 + +0.8 3,530,166 + -0.2 3,530,182 + Dsui_3287 0.77 -0.2 3,530,198 - Dsui_3287 0.79 -2.2
Or see this region's nucleotide sequence