Strain Fitness in Dechlorosoma suillum PS around Dsui_3229

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3227 and Dsui_3228 are separated by 163 nucleotidesDsui_3228 and Dsui_3229 are separated by 72 nucleotidesDsui_3229 and Dsui_3230 are separated by 2 nucleotides Dsui_3227: Dsui_3227 - 2-isopropylmalate synthase, at 3,465,263 to 3,466,945 _3227 Dsui_3228: Dsui_3228 - transcriptional regulator, at 3,467,109 to 3,467,576 _3228 Dsui_3229: Dsui_3229 - transglutaminase-like enzyme, predicted cysteine protease, at 3,467,649 to 3,468,590 _3229 Dsui_3230: Dsui_3230 - hypothetical protein, at 3,468,593 to 3,471,172 _3230 Position (kb) 3467 3468 3469Strain fitness (log2 ratio) -3 -2 -1 0 1at 3466.681 kb on + strandat 3466.717 kb on - strand, within Dsui_3227at 3466.722 kb on - strand, within Dsui_3227at 3466.837 kb on - strandat 3466.871 kb on - strandat 3466.886 kb on - strandat 3466.941 kb on - strandat 3467.154 kb on - strandat 3467.287 kb on + strand, within Dsui_3228at 3467.338 kb on + strand, within Dsui_3228at 3467.356 kb on + strand, within Dsui_3228at 3467.420 kb on - strand, within Dsui_3228at 3467.539 kb on + strandat 3467.556 kb on + strandat 3467.563 kb on - strandat 3467.617 kb on - strandat 3467.660 kb on - strandat 3467.667 kb on + strandat 3467.714 kb on + strandat 3467.722 kb on - strandat 3467.722 kb on - strandat 3467.722 kb on - strandat 3467.763 kb on - strand, within Dsui_3229at 3467.805 kb on + strandat 3467.812 kb on - strand, within Dsui_3229at 3467.820 kb on + strandat 3467.828 kb on - strand, within Dsui_3229at 3467.950 kb on + strandat 3468.133 kb on - strand, within Dsui_3229at 3468.149 kb on + strandat 3468.861 kb on - strand, within Dsui_3230at 3469.179 kb on + strandat 3469.206 kb on - strand, within Dsui_3230at 3469.233 kb on - strand, within Dsui_3230at 3469.260 kb on - strand, within Dsui_3230at 3469.337 kb on + strandat 3469.414 kb on - strand, within Dsui_3230at 3469.552 kb on - strandat 3469.576 kb on + strand, within Dsui_3230

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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3,466,681 + +0.7
3,466,717 - Dsui_3227 0.86 -0.3
3,466,722 - Dsui_3227 0.87 -2.8
3,466,837 - -0.3
3,466,871 - -1.9
3,466,886 - -0.3
3,466,941 - -1.3
3,467,154 - -2.1
3,467,287 + Dsui_3228 0.38 -0.3
3,467,338 + Dsui_3228 0.49 -0.3
3,467,356 + Dsui_3228 0.53 -0.4
3,467,420 - Dsui_3228 0.66 -1.6
3,467,539 + -0.2
3,467,556 + -0.5
3,467,563 - -0.9
3,467,617 - -0.3
3,467,660 - -1.6
3,467,667 + +0.7
3,467,714 + -0.9
3,467,722 - +0.7
3,467,722 - +0.7
3,467,722 - -1.1
3,467,763 - Dsui_3229 0.12 -1.3
3,467,805 + -0.9
3,467,812 - Dsui_3229 0.17 -0.3
3,467,820 + -0.9
3,467,828 - Dsui_3229 0.19 -2.5
3,467,950 + +0.7
3,468,133 - Dsui_3229 0.51 -0.6
3,468,149 + +0.7
3,468,861 - Dsui_3230 0.10 -2.5
3,469,179 + -0.9
3,469,206 - Dsui_3230 0.24 -1.3
3,469,233 - Dsui_3230 0.25 -2.7
3,469,260 - Dsui_3230 0.26 -0.3
3,469,337 + -0.3
3,469,414 - Dsui_3230 0.32 +0.7
3,469,552 - -1.3
3,469,576 + Dsui_3230 0.38 -2.1

Or see this region's nucleotide sequence