Strain Fitness in Dechlorosoma suillum PS around Dsui_3222

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3220 and Dsui_3221 are separated by 110 nucleotidesDsui_3221 and Dsui_3222 are separated by 39 nucleotidesDsui_3222 and Dsui_3223 are separated by 140 nucleotides Dsui_3220: Dsui_3220 - PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase, at 3,458,280 to 3,459,923 _3220 Dsui_3221: Dsui_3221 - cytochrome c553, at 3,460,034 to 3,460,720 _3221 Dsui_3222: Dsui_3222 - oligoribonuclease (3'->5' exoribonuclease), at 3,460,760 to 3,461,305 _3222 Dsui_3223: Dsui_3223 - Zn-dependent protease with chaperone function, at 3,461,446 to 3,462,717 _3223 Position (kb) 3460 3461 3462Strain fitness (log2 ratio) -2 -1 0 1at 3459.916 kb on - strandat 3459.974 kb on + strandat 3459.985 kb on + strandat 3460.030 kb on - strandat 3460.032 kb on + strandat 3460.040 kb on - strandat 3460.040 kb on - strandat 3460.113 kb on - strand, within Dsui_3221at 3460.302 kb on + strand, within Dsui_3221at 3460.302 kb on + strand, within Dsui_3221at 3460.314 kb on + strand, within Dsui_3221at 3460.356 kb on + strandat 3460.401 kb on - strand, within Dsui_3221at 3460.444 kb on - strand, within Dsui_3221at 3460.498 kb on - strand, within Dsui_3221at 3460.660 kb on + strandat 3460.673 kb on + strandat 3460.673 kb on + strandat 3460.680 kb on + strandat 3460.688 kb on - strandat 3460.722 kb on + strandat 3460.726 kb on + strandat 3461.345 kb on + strandat 3461.353 kb on - strandat 3461.356 kb on + strandat 3461.393 kb on + strandat 3461.394 kb on + strandat 3461.480 kb on + strandat 3461.484 kb on - strandat 3461.522 kb on - strandat 3461.537 kb on - strandat 3461.580 kb on + strand, within Dsui_3223at 3461.617 kb on + strand, within Dsui_3223at 3461.657 kb on + strand, within Dsui_3223at 3461.672 kb on + strand, within Dsui_3223at 3461.750 kb on + strand, within Dsui_3223at 3461.758 kb on - strand, within Dsui_3223at 3461.797 kb on - strand, within Dsui_3223at 3461.858 kb on + strand, within Dsui_3223at 3461.858 kb on + strand, within Dsui_3223at 3461.863 kb on + strand, within Dsui_3223at 3461.918 kb on + strand, within Dsui_3223at 3461.962 kb on - strandat 3461.978 kb on + strand, within Dsui_3223at 3461.986 kb on - strandat 3462.152 kb on + strand, within Dsui_3223at 3462.219 kb on + strand, within Dsui_3223at 3462.249 kb on + strand, within Dsui_3223at 3462.280 kb on - strand, within Dsui_3223at 3462.286 kb on - strandat 3462.287 kb on + strand, within Dsui_3223

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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3,459,916 - +0.7
3,459,974 + +0.8
3,459,985 + +0.1
3,460,030 - +0.0
3,460,032 + +0.7
3,460,040 - -0.3
3,460,040 - -0.2
3,460,113 - Dsui_3221 0.11 +0.2
3,460,302 + Dsui_3221 0.39 -1.6
3,460,302 + Dsui_3221 0.39 -0.3
3,460,314 + Dsui_3221 0.41 -1.3
3,460,356 + -0.3
3,460,401 - Dsui_3221 0.53 -0.2
3,460,444 - Dsui_3221 0.60 -0.2
3,460,498 - Dsui_3221 0.68 -0.2
3,460,660 + +0.7
3,460,673 + -0.3
3,460,673 + -0.3
3,460,680 + -1.6
3,460,688 - -0.3
3,460,722 + +0.7
3,460,726 + +0.7
3,461,345 + +0.9
3,461,353 - +0.7
3,461,356 + -0.9
3,461,393 + -0.6
3,461,394 + +0.2
3,461,480 + -0.9
3,461,484 - -1.6
3,461,522 - -0.3
3,461,537 - +0.7
3,461,580 + Dsui_3223 0.11 -0.3
3,461,617 + Dsui_3223 0.13 -0.5
3,461,657 + Dsui_3223 0.17 -0.5
3,461,672 + Dsui_3223 0.18 -0.6
3,461,750 + Dsui_3223 0.24 -0.5
3,461,758 - Dsui_3223 0.25 +0.7
3,461,797 - Dsui_3223 0.28 -0.3
3,461,858 + Dsui_3223 0.32 -0.1
3,461,858 + Dsui_3223 0.32 -1.9
3,461,863 + Dsui_3223 0.33 -0.4
3,461,918 + Dsui_3223 0.37 -0.3
3,461,962 - +0.7
3,461,978 + Dsui_3223 0.42 -1.4
3,461,986 - +0.7
3,462,152 + Dsui_3223 0.56 -1.3
3,462,219 + Dsui_3223 0.61 -0.1
3,462,249 + Dsui_3223 0.63 -0.4
3,462,280 - Dsui_3223 0.66 +0.7
3,462,286 - +0.7
3,462,287 + Dsui_3223 0.66 -1.0

Or see this region's nucleotide sequence