Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2979 and Dsui_2980 overlap by 1 nucleotides Dsui_2980 and Dsui_2981 are separated by 3 nucleotides Dsui_2981 and Dsui_2982 are separated by 10 nucleotides
Dsui_2979: Dsui_2979 - electron transport complex, RnfABCDGE type, A subunit, at 3,186,018 to 3,186,605
_2979
Dsui_2980: Dsui_2980 - electron transport complex, RnfABCDGE type, B subunit, at 3,186,605 to 3,187,147
_2980
Dsui_2981: Dsui_2981 - electron transport complex, RnfABCDGE type, C subunit, at 3,187,151 to 3,188,932
_2981
Dsui_2982: Dsui_2982 - electron transport complex, RnfABCDGE type, D subunit, at 3,188,943 to 3,189,932
_2982
Position (kb)
3187
3188
3189 Strain fitness (log2 ratio)
-2
-1
0
1 at 3186.207 kb on - strand, within Dsui_2979 at 3186.241 kb on + strand, within Dsui_2979 at 3186.624 kb on + strand at 3186.939 kb on + strand, within Dsui_2980 at 3187.493 kb on + strand, within Dsui_2981 at 3187.865 kb on - strand at 3188.387 kb on + strand, within Dsui_2981 at 3188.521 kb on + strand, within Dsui_2981 at 3188.850 kb on - strand at 3189.316 kb on + strand, within Dsui_2982 at 3189.373 kb on + strand, within Dsui_2982 at 3189.868 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,186,207 - Dsui_2979 0.32 -0.9 3,186,241 + Dsui_2979 0.38 -1.0 3,186,624 + -0.4 3,186,939 + Dsui_2980 0.62 -1.8 3,187,493 + Dsui_2981 0.19 -1.7 3,187,865 - -0.2 3,188,387 + Dsui_2981 0.69 -2.3 3,188,521 + Dsui_2981 0.77 -1.4 3,188,850 - +0.8 3,189,316 + Dsui_2982 0.38 -1.8 3,189,373 + Dsui_2982 0.43 -2.0 3,189,868 + -0.8
Or see this region's nucleotide sequence