Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2975 and Dsui_2976 are separated by 164 nucleotides Dsui_2976 and Dsui_2977 overlap by 4 nucleotides Dsui_2977 and Dsui_2978 are separated by 290 nucleotides
Dsui_2975: Dsui_2975 - TonB-dependent siderophore receptor, at 3,180,448 to 3,182,874
_2975
Dsui_2976: Dsui_2976 - Fe2+-dicitrate sensor, membrane component, at 3,183,039 to 3,184,058
_2976
Dsui_2977: Dsui_2977 - RNA polymerase sigma factor, sigma-70 family, at 3,184,055 to 3,184,567
_2977
Dsui_2978: Dsui_2978 - dihydroorotate dehydrogenase, subfamily 2, at 3,184,858 to 3,185,919
_2978
Position (kb)
3183
3184
3185 Strain fitness (log2 ratio)
-1
0
1 at 3182.195 kb on - strand at 3182.225 kb on + strand at 3182.247 kb on + strand, within Dsui_2975 at 3182.254 kb on + strand at 3182.255 kb on - strand at 3182.341 kb on - strand, within Dsui_2975 at 3182.379 kb on - strand, within Dsui_2975 at 3182.542 kb on - strand, within Dsui_2975 at 3182.689 kb on - strand at 3182.902 kb on - strand at 3182.919 kb on - strand at 3182.929 kb on - strand at 3182.931 kb on + strand at 3182.939 kb on - strand at 3183.114 kb on - strand at 3183.184 kb on - strand, within Dsui_2976 at 3183.358 kb on + strand at 3183.364 kb on + strand at 3183.419 kb on - strand, within Dsui_2976 at 3183.503 kb on - strand, within Dsui_2976 at 3183.560 kb on - strand, within Dsui_2976 at 3183.584 kb on - strand, within Dsui_2976 at 3183.733 kb on + strand at 3184.106 kb on - strand at 3184.106 kb on - strand at 3184.164 kb on + strand, within Dsui_2977 at 3184.319 kb on - strand, within Dsui_2977 at 3184.360 kb on - strand, within Dsui_2977 at 3184.400 kb on - strand, within Dsui_2977 at 3184.445 kb on + strand, within Dsui_2977 at 3184.484 kb on - strand, within Dsui_2977 at 3184.521 kb on - strand at 3184.537 kb on - strand at 3184.747 kb on - strand at 3184.851 kb on - strand at 3184.882 kb on + strand at 3184.882 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,182,195 - +0.8 3,182,225 + -0.2 3,182,247 + Dsui_2975 0.74 -1.2 3,182,254 + +0.8 3,182,255 - -0.2 3,182,341 - Dsui_2975 0.78 -1.2 3,182,379 - Dsui_2975 0.80 -0.2 3,182,542 - Dsui_2975 0.86 -0.2 3,182,689 - +0.8 3,182,902 - +0.8 3,182,919 - -1.2 3,182,929 - +0.4 3,182,931 + -0.2 3,182,939 - -0.8 3,183,114 - +0.3 3,183,184 - Dsui_2976 0.14 -0.4 3,183,358 + +0.8 3,183,364 + -0.2 3,183,419 - Dsui_2976 0.37 +0.0 3,183,503 - Dsui_2976 0.45 -0.1 3,183,560 - Dsui_2976 0.51 -0.0 3,183,584 - Dsui_2976 0.53 -0.4 3,183,733 + +0.8 3,184,106 - +0.1 3,184,106 - -0.6 3,184,164 + Dsui_2977 0.21 -0.8 3,184,319 - Dsui_2977 0.51 -0.2 3,184,360 - Dsui_2977 0.59 +0.2 3,184,400 - Dsui_2977 0.67 +0.1 3,184,445 + Dsui_2977 0.76 -1.2 3,184,484 - Dsui_2977 0.84 -0.3 3,184,521 - -0.0 3,184,537 - -0.8 3,184,747 - -0.8 3,184,851 - +0.8 3,184,882 + -0.4 3,184,882 + -0.2
Or see this region's nucleotide sequence