Strain Fitness in Dechlorosoma suillum PS around Dsui_2952

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2951 and Dsui_2952 overlap by 4 nucleotidesDsui_2952 and Dsui_2953 are separated by 8 nucleotides Dsui_2951: Dsui_2951 - putative iron-regulated membrane protein, at 3,158,704 to 3,159,981 _2951 Dsui_2952: Dsui_2952 - outer membrane porin, OprD family, at 3,159,978 to 3,161,300 _2952 Dsui_2953: Dsui_2953 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,161,309 to 3,162,703 _2953 Position (kb) 3159 3160 3161 3162Strain fitness (log2 ratio) -3 -2 -1 0 1at 3159.002 kb on + strand, within Dsui_2951at 3159.020 kb on - strand, within Dsui_2951at 3159.023 kb on + strand, within Dsui_2951at 3159.138 kb on + strand, within Dsui_2951at 3159.153 kb on + strandat 3159.210 kb on + strandat 3159.210 kb on + strandat 3159.218 kb on - strand, within Dsui_2951at 3159.402 kb on + strandat 3159.428 kb on + strand, within Dsui_2951at 3159.442 kb on + strand, within Dsui_2951at 3159.471 kb on + strand, within Dsui_2951at 3159.484 kb on + strand, within Dsui_2951at 3159.744 kb on + strandat 3159.752 kb on - strand, within Dsui_2951at 3160.034 kb on - strandat 3160.166 kb on + strand, within Dsui_2952at 3160.311 kb on - strand, within Dsui_2952at 3160.322 kb on - strandat 3160.364 kb on + strandat 3160.368 kb on - strand, within Dsui_2952at 3160.378 kb on - strand, within Dsui_2952at 3160.521 kb on + strand, within Dsui_2952at 3160.539 kb on - strand, within Dsui_2952at 3160.570 kb on - strand, within Dsui_2952at 3160.723 kb on + strandat 3160.733 kb on + strandat 3160.814 kb on - strand, within Dsui_2952at 3160.826 kb on + strandat 3160.834 kb on - strand, within Dsui_2952at 3160.834 kb on - strand, within Dsui_2952at 3160.931 kb on - strand, within Dsui_2952at 3160.983 kb on - strand, within Dsui_2952at 3161.042 kb on - strand, within Dsui_2952at 3161.054 kb on - strandat 3161.108 kb on - strand, within Dsui_2952at 3161.181 kb on - strandat 3161.187 kb on - strandat 3161.276 kb on - strandat 3161.276 kb on - strandat 3161.430 kb on + strandat 3161.660 kb on - strand, within Dsui_2953at 3161.734 kb on - strand, within Dsui_2953at 3161.759 kb on - strand, within Dsui_2953at 3161.831 kb on + strandat 3161.846 kb on - strand, within Dsui_2953at 3161.856 kb on - strand, within Dsui_2953at 3161.856 kb on - strand, within Dsui_2953at 3161.910 kb on - strand, within Dsui_2953at 3161.971 kb on - strand, within Dsui_2953at 3161.971 kb on - strand, within Dsui_2953at 3161.978 kb on - strand, within Dsui_2953at 3162.028 kb on + strandat 3162.033 kb on - strand, within Dsui_2953at 3162.118 kb on + strandat 3162.292 kb on - strand, within Dsui_2953

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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3,159,002 + Dsui_2951 0.23 -0.7
3,159,020 - Dsui_2951 0.25 +0.8
3,159,023 + Dsui_2951 0.25 +0.8
3,159,138 + Dsui_2951 0.34 -0.7
3,159,153 + +0.8
3,159,210 + +0.8
3,159,210 + +0.8
3,159,218 - Dsui_2951 0.40 +0.8
3,159,402 + +0.8
3,159,428 + Dsui_2951 0.57 -0.2
3,159,442 + Dsui_2951 0.58 -2.9
3,159,471 + Dsui_2951 0.60 -2.2
3,159,484 + Dsui_2951 0.61 -1.2
3,159,744 + -0.2
3,159,752 - Dsui_2951 0.82 -1.5
3,160,034 - -0.2
3,160,166 + Dsui_2952 0.14 -1.5
3,160,311 - Dsui_2952 0.25 +0.8
3,160,322 - +0.8
3,160,364 + -0.2
3,160,368 - Dsui_2952 0.29 +0.8
3,160,378 - Dsui_2952 0.30 -1.5
3,160,521 + Dsui_2952 0.41 -0.5
3,160,539 - Dsui_2952 0.42 -2.3
3,160,570 - Dsui_2952 0.45 -0.7
3,160,723 + -0.7
3,160,733 + -0.2
3,160,814 - Dsui_2952 0.63 -0.7
3,160,826 + +0.8
3,160,834 - Dsui_2952 0.65 +0.8
3,160,834 - Dsui_2952 0.65 +0.8
3,160,931 - Dsui_2952 0.72 +0.8
3,160,983 - Dsui_2952 0.76 -0.7
3,161,042 - Dsui_2952 0.80 -1.2
3,161,054 - +0.8
3,161,108 - Dsui_2952 0.85 -1.2
3,161,181 - +0.8
3,161,187 - -1.2
3,161,276 - -0.2
3,161,276 - -3.1
3,161,430 + -1.5
3,161,660 - Dsui_2953 0.25 +0.8
3,161,734 - Dsui_2953 0.30 -1.7
3,161,759 - Dsui_2953 0.32 -1.2
3,161,831 + -0.2
3,161,846 - Dsui_2953 0.38 +0.8
3,161,856 - Dsui_2953 0.39 -2.2
3,161,856 - Dsui_2953 0.39 -0.7
3,161,910 - Dsui_2953 0.43 -0.2
3,161,971 - Dsui_2953 0.47 +0.8
3,161,971 - Dsui_2953 0.47 -1.7
3,161,978 - Dsui_2953 0.48 -1.5
3,162,028 + -0.2
3,162,033 - Dsui_2953 0.52 -0.7
3,162,118 + +0.8
3,162,292 - Dsui_2953 0.70 +0.3

Or see this region's nucleotide sequence