Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2951 and Dsui_2952 overlap by 4 nucleotides Dsui_2952 and Dsui_2953 are separated by 8 nucleotides
Dsui_2951: Dsui_2951 - putative iron-regulated membrane protein, at 3,158,704 to 3,159,981
_2951
Dsui_2952: Dsui_2952 - outer membrane porin, OprD family, at 3,159,978 to 3,161,300
_2952
Dsui_2953: Dsui_2953 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,161,309 to 3,162,703
_2953
Position (kb)
3159
3160
3161
3162 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3159.002 kb on + strand, within Dsui_2951 at 3159.020 kb on - strand, within Dsui_2951 at 3159.023 kb on + strand, within Dsui_2951 at 3159.138 kb on + strand, within Dsui_2951 at 3159.153 kb on + strand at 3159.210 kb on + strand at 3159.210 kb on + strand at 3159.218 kb on - strand, within Dsui_2951 at 3159.402 kb on + strand at 3159.428 kb on + strand, within Dsui_2951 at 3159.442 kb on + strand, within Dsui_2951 at 3159.471 kb on + strand, within Dsui_2951 at 3159.484 kb on + strand, within Dsui_2951 at 3159.744 kb on + strand at 3159.752 kb on - strand, within Dsui_2951 at 3160.034 kb on - strand at 3160.166 kb on + strand, within Dsui_2952 at 3160.311 kb on - strand, within Dsui_2952 at 3160.322 kb on - strand at 3160.364 kb on + strand at 3160.368 kb on - strand, within Dsui_2952 at 3160.378 kb on - strand, within Dsui_2952 at 3160.521 kb on + strand, within Dsui_2952 at 3160.539 kb on - strand, within Dsui_2952 at 3160.570 kb on - strand, within Dsui_2952 at 3160.723 kb on + strand at 3160.733 kb on + strand at 3160.814 kb on - strand, within Dsui_2952 at 3160.826 kb on + strand at 3160.834 kb on - strand, within Dsui_2952 at 3160.834 kb on - strand, within Dsui_2952 at 3160.931 kb on - strand, within Dsui_2952 at 3160.983 kb on - strand, within Dsui_2952 at 3161.042 kb on - strand, within Dsui_2952 at 3161.054 kb on - strand at 3161.108 kb on - strand, within Dsui_2952 at 3161.181 kb on - strand at 3161.187 kb on - strand at 3161.276 kb on - strand at 3161.276 kb on - strand at 3161.430 kb on + strand at 3161.660 kb on - strand, within Dsui_2953 at 3161.734 kb on - strand, within Dsui_2953 at 3161.759 kb on - strand, within Dsui_2953 at 3161.831 kb on + strand at 3161.846 kb on - strand, within Dsui_2953 at 3161.856 kb on - strand, within Dsui_2953 at 3161.856 kb on - strand, within Dsui_2953 at 3161.910 kb on - strand, within Dsui_2953 at 3161.971 kb on - strand, within Dsui_2953 at 3161.971 kb on - strand, within Dsui_2953 at 3161.978 kb on - strand, within Dsui_2953 at 3162.028 kb on + strand at 3162.033 kb on - strand, within Dsui_2953 at 3162.118 kb on + strand at 3162.292 kb on - strand, within Dsui_2953
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,159,002 + Dsui_2951 0.23 -0.7 3,159,020 - Dsui_2951 0.25 +0.8 3,159,023 + Dsui_2951 0.25 +0.8 3,159,138 + Dsui_2951 0.34 -0.7 3,159,153 + +0.8 3,159,210 + +0.8 3,159,210 + +0.8 3,159,218 - Dsui_2951 0.40 +0.8 3,159,402 + +0.8 3,159,428 + Dsui_2951 0.57 -0.2 3,159,442 + Dsui_2951 0.58 -2.9 3,159,471 + Dsui_2951 0.60 -2.2 3,159,484 + Dsui_2951 0.61 -1.2 3,159,744 + -0.2 3,159,752 - Dsui_2951 0.82 -1.5 3,160,034 - -0.2 3,160,166 + Dsui_2952 0.14 -1.5 3,160,311 - Dsui_2952 0.25 +0.8 3,160,322 - +0.8 3,160,364 + -0.2 3,160,368 - Dsui_2952 0.29 +0.8 3,160,378 - Dsui_2952 0.30 -1.5 3,160,521 + Dsui_2952 0.41 -0.5 3,160,539 - Dsui_2952 0.42 -2.3 3,160,570 - Dsui_2952 0.45 -0.7 3,160,723 + -0.7 3,160,733 + -0.2 3,160,814 - Dsui_2952 0.63 -0.7 3,160,826 + +0.8 3,160,834 - Dsui_2952 0.65 +0.8 3,160,834 - Dsui_2952 0.65 +0.8 3,160,931 - Dsui_2952 0.72 +0.8 3,160,983 - Dsui_2952 0.76 -0.7 3,161,042 - Dsui_2952 0.80 -1.2 3,161,054 - +0.8 3,161,108 - Dsui_2952 0.85 -1.2 3,161,181 - +0.8 3,161,187 - -1.2 3,161,276 - -0.2 3,161,276 - -3.1 3,161,430 + -1.5 3,161,660 - Dsui_2953 0.25 +0.8 3,161,734 - Dsui_2953 0.30 -1.7 3,161,759 - Dsui_2953 0.32 -1.2 3,161,831 + -0.2 3,161,846 - Dsui_2953 0.38 +0.8 3,161,856 - Dsui_2953 0.39 -2.2 3,161,856 - Dsui_2953 0.39 -0.7 3,161,910 - Dsui_2953 0.43 -0.2 3,161,971 - Dsui_2953 0.47 +0.8 3,161,971 - Dsui_2953 0.47 -1.7 3,161,978 - Dsui_2953 0.48 -1.5 3,162,028 + -0.2 3,162,033 - Dsui_2953 0.52 -0.7 3,162,118 + +0.8 3,162,292 - Dsui_2953 0.70 +0.3
Or see this region's nucleotide sequence