Strain Fitness in Dechlorosoma suillum PS around Dsui_2874

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2872 and Dsui_2873 are separated by 10 nucleotidesDsui_2873 and Dsui_2874 are separated by 222 nucleotidesDsui_2874 and Dsui_2875 are separated by 150 nucleotides Dsui_2872: Dsui_2872 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 3,066,976 to 3,067,464 _2872 Dsui_2873: Dsui_2873 - Peroxiredoxin, at 3,067,475 to 3,067,939 _2873 Dsui_2874: Dsui_2874 - putative periplasmic/secreted protein, at 3,068,162 to 3,068,845 _2874 Dsui_2875: Dsui_2875 - outer membrane protein, at 3,068,996 to 3,070,471 _2875 Position (kb) 3068 3069Strain fitness (log2 ratio) -2 -1 0 1at 3067.243 kb on - strand, within Dsui_2872at 3067.310 kb on + strand, within Dsui_2872at 3067.318 kb on - strand, within Dsui_2872at 3067.433 kb on + strandat 3067.583 kb on - strand, within Dsui_2873at 3067.937 kb on - strandat 3068.119 kb on + strandat 3068.194 kb on - strandat 3068.244 kb on + strand, within Dsui_2874at 3068.382 kb on + strand, within Dsui_2874at 3068.423 kb on + strand, within Dsui_2874at 3068.423 kb on + strand, within Dsui_2874at 3068.438 kb on + strand, within Dsui_2874at 3068.547 kb on + strand, within Dsui_2874at 3068.933 kb on - strandat 3068.971 kb on - strandat 3069.041 kb on - strandat 3069.278 kb on + strand, within Dsui_2875at 3069.377 kb on + strand, within Dsui_2875at 3069.482 kb on + strand, within Dsui_2875at 3069.482 kb on + strandat 3069.487 kb on + strand, within Dsui_2875at 3069.500 kb on - strandat 3069.500 kb on - strandat 3069.552 kb on + strand, within Dsui_2875at 3069.621 kb on + strand, within Dsui_2875

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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3,067,243 - Dsui_2872 0.55 +0.2
3,067,310 + Dsui_2872 0.68 -0.2
3,067,318 - Dsui_2872 0.70 -0.2
3,067,433 + -1.1
3,067,583 - Dsui_2873 0.23 -0.1
3,067,937 - -0.0
3,068,119 + -0.1
3,068,194 - -2.6
3,068,244 + Dsui_2874 0.12 +0.2
3,068,382 + Dsui_2874 0.32 -0.8
3,068,423 + Dsui_2874 0.38 +0.0
3,068,423 + Dsui_2874 0.38 +0.2
3,068,438 + Dsui_2874 0.40 +0.6
3,068,547 + Dsui_2874 0.56 +0.9
3,068,933 - +0.9
3,068,971 - -0.1
3,069,041 - -0.1
3,069,278 + Dsui_2875 0.19 +0.4
3,069,377 + Dsui_2875 0.26 -0.1
3,069,482 + Dsui_2875 0.33 -1.0
3,069,482 + +0.9
3,069,487 + Dsui_2875 0.33 -0.1
3,069,500 - +0.9
3,069,500 - +0.9
3,069,552 + Dsui_2875 0.38 -1.7
3,069,621 + Dsui_2875 0.42 -1.1

Or see this region's nucleotide sequence