Strain Fitness in Dechlorosoma suillum PS around Dsui_2676

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2673 and Dsui_2674 overlap by 8 nucleotidesDsui_2674 and Dsui_2675 are separated by 60 nucleotidesDsui_2675 and Dsui_2676 overlap by 1 nucleotidesDsui_2676 and Dsui_2677 are separated by 199 nucleotides Dsui_2673: Dsui_2673 - hypothetical protein, at 2,826,147 to 2,826,470 _2673 Dsui_2674: Dsui_2674 - oligoketide cyclase/lipid transport protein, at 2,826,463 to 2,826,894 _2674 Dsui_2675: Dsui_2675 - SsrA-binding protein, at 2,826,955 to 2,827,401 _2675 Dsui_2676: Dsui_2676 - putative membrane protein, at 2,827,401 to 2,828,021 _2676 Dsui_2677: Dsui_2677 - phosphoenolpyruvate synthase, at 2,828,221 to 2,830,596 _2677 Position (kb) 2827 2828 2829Strain fitness (log2 ratio) -3 -2 -1 0 1at 2826.409 kb on - strand, within Dsui_2673at 2826.897 kb on - strandat 2826.897 kb on - strandat 2826.980 kb on - strandat 2827.403 kb on - strandat 2827.426 kb on - strandat 2827.429 kb on - strandat 2827.439 kb on - strandat 2827.530 kb on + strand, within Dsui_2676at 2827.598 kb on - strand, within Dsui_2676at 2827.612 kb on - strand, within Dsui_2676at 2827.995 kb on - strandat 2828.010 kb on + strandat 2828.018 kb on - strandat 2828.076 kb on + strandat 2828.125 kb on + strandat 2828.133 kb on - strandat 2828.191 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,826,409 - Dsui_2673 0.81 -3.0
2,826,897 - +0.1
2,826,897 - -0.4
2,826,980 - +0.8
2,827,403 - +0.8
2,827,426 - +0.8
2,827,429 - +0.8
2,827,439 - -0.2
2,827,530 + Dsui_2676 0.21 -0.2
2,827,598 - Dsui_2676 0.32 +0.8
2,827,612 - Dsui_2676 0.34 -1.5
2,827,995 - +0.8
2,828,010 + -0.4
2,828,018 - -0.2
2,828,076 + -0.2
2,828,125 + -0.2
2,828,133 - +0.8
2,828,191 + -1.2

Or see this region's nucleotide sequence