Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2673 and Dsui_2674 overlap by 8 nucleotides Dsui_2674 and Dsui_2675 are separated by 60 nucleotides Dsui_2675 and Dsui_2676 overlap by 1 nucleotides Dsui_2676 and Dsui_2677 are separated by 199 nucleotides
Dsui_2673: Dsui_2673 - hypothetical protein, at 2,826,147 to 2,826,470
_2673
Dsui_2674: Dsui_2674 - oligoketide cyclase/lipid transport protein, at 2,826,463 to 2,826,894
_2674
Dsui_2675: Dsui_2675 - SsrA-binding protein, at 2,826,955 to 2,827,401
_2675
Dsui_2676: Dsui_2676 - putative membrane protein, at 2,827,401 to 2,828,021
_2676
Dsui_2677: Dsui_2677 - phosphoenolpyruvate synthase, at 2,828,221 to 2,830,596
_2677
Position (kb)
2827
2828
2829 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2826.409 kb on - strand, within Dsui_2673 at 2826.897 kb on - strand at 2826.897 kb on - strand at 2826.980 kb on - strand at 2827.403 kb on - strand at 2827.426 kb on - strand at 2827.429 kb on - strand at 2827.439 kb on - strand at 2827.530 kb on + strand, within Dsui_2676 at 2827.598 kb on - strand, within Dsui_2676 at 2827.612 kb on - strand, within Dsui_2676 at 2827.995 kb on - strand at 2828.010 kb on + strand at 2828.018 kb on - strand at 2828.076 kb on + strand at 2828.125 kb on + strand at 2828.133 kb on - strand at 2828.191 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 2,826,409 - Dsui_2673 0.81 -3.0 2,826,897 - +0.1 2,826,897 - -0.4 2,826,980 - +0.8 2,827,403 - +0.8 2,827,426 - +0.8 2,827,429 - +0.8 2,827,439 - -0.2 2,827,530 + Dsui_2676 0.21 -0.2 2,827,598 - Dsui_2676 0.32 +0.8 2,827,612 - Dsui_2676 0.34 -1.5 2,827,995 - +0.8 2,828,010 + -0.4 2,828,018 - -0.2 2,828,076 + -0.2 2,828,125 + -0.2 2,828,133 - +0.8 2,828,191 + -1.2
Or see this region's nucleotide sequence