Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2636 and Dsui_2637 overlap by 4 nucleotides Dsui_2637 and Dsui_2638 are separated by 80 nucleotides Dsui_2638 and Dsui_2639 are separated by 21 nucleotides Dsui_2639 and Dsui_2640 are separated by 96 nucleotides
Dsui_2636: Dsui_2636 - RND family efflux transporter, MFP subunit, at 2,788,227 to 2,789,816
_2636
Dsui_2637: Dsui_2637 - outer membrane protein, at 2,789,813 to 2,791,084
_2637
Dsui_2638: Dsui_2638 - hypothetical protein, at 2,791,165 to 2,791,509
_2638
Dsui_2639: Dsui_2639 - putative metal-binding protein, at 2,791,531 to 2,791,971
_2639
Dsui_2640: Dsui_2640 - Cytochrome c, at 2,792,068 to 2,792,730
_2640
Position (kb)
2789
2790
2791
2792 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2788.936 kb on - strand, within Dsui_2636 at 2788.962 kb on + strand, within Dsui_2636 at 2788.963 kb on + strand, within Dsui_2636 at 2788.971 kb on - strand, within Dsui_2636 at 2788.971 kb on - strand, within Dsui_2636 at 2788.971 kb on - strand, within Dsui_2636 at 2788.971 kb on - strand, within Dsui_2636 at 2788.971 kb on - strand, within Dsui_2636 at 2788.983 kb on - strand, within Dsui_2636 at 2789.152 kb on + strand, within Dsui_2636 at 2789.160 kb on - strand, within Dsui_2636 at 2789.160 kb on - strand, within Dsui_2636 at 2789.314 kb on - strand, within Dsui_2636 at 2789.336 kb on + strand, within Dsui_2636 at 2789.494 kb on - strand, within Dsui_2636 at 2789.569 kb on + strand, within Dsui_2636 at 2789.571 kb on + strand, within Dsui_2636 at 2789.577 kb on - strand, within Dsui_2636 at 2789.579 kb on - strand, within Dsui_2636 at 2789.634 kb on - strand, within Dsui_2636 at 2789.639 kb on - strand, within Dsui_2636 at 2789.798 kb on + strand at 2789.801 kb on - strand at 2789.806 kb on + strand at 2789.806 kb on - strand at 2789.996 kb on - strand, within Dsui_2637 at 2789.996 kb on - strand, within Dsui_2637 at 2789.996 kb on - strand, within Dsui_2637 at 2790.119 kb on - strand, within Dsui_2637 at 2790.166 kb on - strand, within Dsui_2637 at 2790.199 kb on + strand, within Dsui_2637 at 2790.220 kb on + strand at 2790.225 kb on + strand, within Dsui_2637 at 2790.228 kb on - strand, within Dsui_2637 at 2790.228 kb on - strand, within Dsui_2637 at 2790.228 kb on - strand, within Dsui_2637 at 2790.327 kb on - strand, within Dsui_2637 at 2790.327 kb on - strand, within Dsui_2637 at 2790.327 kb on - strand, within Dsui_2637 at 2790.365 kb on - strand, within Dsui_2637 at 2790.365 kb on - strand, within Dsui_2637 at 2790.519 kb on - strand, within Dsui_2637 at 2790.647 kb on - strand, within Dsui_2637 at 2790.695 kb on - strand, within Dsui_2637 at 2790.697 kb on + strand, within Dsui_2637 at 2790.705 kb on - strand, within Dsui_2637 at 2790.946 kb on + strand, within Dsui_2637 at 2790.946 kb on + strand, within Dsui_2637 at 2790.977 kb on - strand at 2790.987 kb on - strand at 2790.991 kb on - strand at 2791.015 kb on - strand at 2791.135 kb on + strand at 2791.143 kb on + strand at 2791.151 kb on - strand at 2791.210 kb on - strand, within Dsui_2638 at 2791.306 kb on + strand, within Dsui_2638 at 2791.369 kb on - strand, within Dsui_2638 at 2791.369 kb on - strand, within Dsui_2638 at 2791.439 kb on + strand, within Dsui_2638 at 2791.460 kb on + strand, within Dsui_2638 at 2791.503 kb on - strand at 2791.546 kb on + strand at 2791.564 kb on + strand at 2791.604 kb on - strand, within Dsui_2639 at 2791.662 kb on - strand, within Dsui_2639 at 2791.728 kb on + strand, within Dsui_2639 at 2791.773 kb on - strand, within Dsui_2639 at 2791.801 kb on - strand, within Dsui_2639 at 2791.884 kb on - strand, within Dsui_2639 at 2791.928 kb on - strand at 2791.958 kb on - strand at 2791.998 kb on - strand at 2792.011 kb on - strand at 2792.065 kb on + strand at 2792.065 kb on + strand at 2792.073 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 2,788,936 - Dsui_2636 0.45 -0.3 2,788,962 + Dsui_2636 0.46 +0.7 2,788,963 + Dsui_2636 0.46 +0.7 2,788,971 - Dsui_2636 0.47 -0.8 2,788,971 - Dsui_2636 0.47 -0.3 2,788,971 - Dsui_2636 0.47 -1.6 2,788,971 - Dsui_2636 0.47 -0.8 2,788,971 - Dsui_2636 0.47 -0.3 2,788,983 - Dsui_2636 0.48 -1.8 2,789,152 + Dsui_2636 0.58 -0.3 2,789,160 - Dsui_2636 0.59 -0.8 2,789,160 - Dsui_2636 0.59 +0.7 2,789,314 - Dsui_2636 0.68 -2.2 2,789,336 + Dsui_2636 0.70 +0.7 2,789,494 - Dsui_2636 0.80 -0.3 2,789,569 + Dsui_2636 0.84 +0.7 2,789,571 + Dsui_2636 0.85 +0.7 2,789,577 - Dsui_2636 0.85 -2.3 2,789,579 - Dsui_2636 0.85 +0.7 2,789,634 - Dsui_2636 0.88 -1.3 2,789,639 - Dsui_2636 0.89 +0.7 2,789,798 + +0.7 2,789,801 - -0.3 2,789,806 + -0.8 2,789,806 - -1.3 2,789,996 - Dsui_2637 0.14 +0.7 2,789,996 - Dsui_2637 0.14 +0.7 2,789,996 - Dsui_2637 0.14 -1.6 2,790,119 - Dsui_2637 0.24 -0.3 2,790,166 - Dsui_2637 0.28 -0.3 2,790,199 + Dsui_2637 0.30 -2.3 2,790,220 + +0.7 2,790,225 + Dsui_2637 0.32 -0.3 2,790,228 - Dsui_2637 0.33 -1.6 2,790,228 - Dsui_2637 0.33 -0.3 2,790,228 - Dsui_2637 0.33 -2.8 2,790,327 - Dsui_2637 0.40 +0.7 2,790,327 - Dsui_2637 0.40 -0.3 2,790,327 - Dsui_2637 0.40 -1.3 2,790,365 - Dsui_2637 0.43 +0.7 2,790,365 - Dsui_2637 0.43 -0.8 2,790,519 - Dsui_2637 0.56 -0.8 2,790,647 - Dsui_2637 0.66 +0.7 2,790,695 - Dsui_2637 0.69 -0.8 2,790,697 + Dsui_2637 0.69 -1.3 2,790,705 - Dsui_2637 0.70 -1.6 2,790,946 + Dsui_2637 0.89 -1.3 2,790,946 + Dsui_2637 0.89 -0.8 2,790,977 - +0.7 2,790,987 - +0.7 2,790,991 - -0.8 2,791,015 - -0.3 2,791,135 + +0.7 2,791,143 + -0.3 2,791,151 - +0.7 2,791,210 - Dsui_2638 0.13 +0.7 2,791,306 + Dsui_2638 0.41 -0.3 2,791,369 - Dsui_2638 0.59 -0.8 2,791,369 - Dsui_2638 0.59 -0.8 2,791,439 + Dsui_2638 0.79 -0.3 2,791,460 + Dsui_2638 0.86 -0.3 2,791,503 - -3.1 2,791,546 + -1.3 2,791,564 + -0.3 2,791,604 - Dsui_2639 0.17 -0.8 2,791,662 - Dsui_2639 0.30 +0.7 2,791,728 + Dsui_2639 0.45 -0.8 2,791,773 - Dsui_2639 0.55 +0.7 2,791,801 - Dsui_2639 0.61 +0.7 2,791,884 - Dsui_2639 0.80 +0.7 2,791,928 - -0.3 2,791,958 - +0.7 2,791,998 - -0.8 2,792,011 - +0.7 2,792,065 + +0.7 2,792,065 + -0.3 2,792,073 - +0.7
Or see this region's nucleotide sequence