Strain Fitness in Dechlorosoma suillum PS around Dsui_2634

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2633 and Dsui_2634 are separated by 674 nucleotidesDsui_2634 and Dsui_2635 overlap by 4 nucleotides Dsui_2633: Dsui_2633 - hypothetical protein, at 2,783,766 to 2,784,023 _2633 Dsui_2634: Dsui_2634 - cytochrome c, mono- and diheme variants family, at 2,784,698 to 2,785,084 _2634 Dsui_2635: Dsui_2635 - heavy metal efflux pump, cobalt-zinc-cadmium, at 2,785,081 to 2,788,215 _2635 Position (kb) 2784 2785 2786Strain fitness (log2 ratio) -2 -1 0 1at 2783.705 kb on + strandat 2783.705 kb on + strandat 2783.708 kb on - strandat 2783.852 kb on - strand, within Dsui_2633at 2783.872 kb on + strand, within Dsui_2633at 2783.904 kb on + strand, within Dsui_2633at 2783.967 kb on + strand, within Dsui_2633at 2783.975 kb on - strand, within Dsui_2633at 2783.975 kb on - strand, within Dsui_2633at 2783.976 kb on - strand, within Dsui_2633at 2783.987 kb on + strand, within Dsui_2633at 2784.000 kb on + strandat 2784.055 kb on - strandat 2784.071 kb on + strandat 2784.084 kb on - strandat 2784.092 kb on + strandat 2784.100 kb on - strandat 2784.100 kb on - strandat 2784.144 kb on + strandat 2784.157 kb on - strandat 2784.159 kb on + strandat 2784.159 kb on + strandat 2784.215 kb on - strandat 2784.217 kb on - strandat 2784.359 kb on + strandat 2784.472 kb on - strandat 2784.509 kb on - strandat 2784.553 kb on - strandat 2784.711 kb on + strandat 2785.004 kb on + strand, within Dsui_2634at 2785.010 kb on + strand, within Dsui_2634at 2785.029 kb on - strand, within Dsui_2634at 2785.029 kb on - strand, within Dsui_2634at 2785.217 kb on - strandat 2785.320 kb on + strandat 2785.473 kb on + strand, within Dsui_2635at 2785.474 kb on - strand, within Dsui_2635at 2785.547 kb on - strand, within Dsui_2635at 2785.588 kb on + strand, within Dsui_2635at 2785.773 kb on - strand, within Dsui_2635at 2785.773 kb on - strand, within Dsui_2635at 2785.881 kb on + strand, within Dsui_2635at 2785.984 kb on + strand, within Dsui_2635at 2786.046 kb on - strand, within Dsui_2635

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,783,705 + -0.3
2,783,705 + -0.8
2,783,708 - -2.4
2,783,852 - Dsui_2633 0.33 +0.7
2,783,872 + Dsui_2633 0.41 -0.3
2,783,904 + Dsui_2633 0.53 -0.8
2,783,967 + Dsui_2633 0.78 -1.6
2,783,975 - Dsui_2633 0.81 +0.7
2,783,975 - Dsui_2633 0.81 +0.7
2,783,976 - Dsui_2633 0.81 +0.7
2,783,987 + Dsui_2633 0.86 -1.3
2,784,000 + -0.8
2,784,055 - +0.7
2,784,071 + +0.7
2,784,084 - +0.7
2,784,092 + -1.6
2,784,100 - +0.7
2,784,100 - +0.7
2,784,144 + -1.3
2,784,157 - +0.7
2,784,159 + +0.7
2,784,159 + +0.7
2,784,215 - -0.3
2,784,217 - -0.3
2,784,359 + -0.8
2,784,472 - -1.6
2,784,509 - -1.3
2,784,553 - -1.3
2,784,711 + +0.7
2,785,004 + Dsui_2634 0.79 -0.3
2,785,010 + Dsui_2634 0.81 +0.7
2,785,029 - Dsui_2634 0.86 +1.7
2,785,029 - Dsui_2634 0.86 -0.3
2,785,217 - +0.7
2,785,320 + +0.7
2,785,473 + Dsui_2635 0.13 -0.8
2,785,474 - Dsui_2635 0.13 +0.7
2,785,547 - Dsui_2635 0.15 +0.2
2,785,588 + Dsui_2635 0.16 +0.7
2,785,773 - Dsui_2635 0.22 -0.3
2,785,773 - Dsui_2635 0.22 +0.7
2,785,881 + Dsui_2635 0.26 -0.8
2,785,984 + Dsui_2635 0.29 -0.3
2,786,046 - Dsui_2635 0.31 -0.3

Or see this region's nucleotide sequence