Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2585 and Dsui_2586 overlap by 4 nucleotides Dsui_2586 and Dsui_2587 are separated by 1 nucleotides Dsui_2587 and Dsui_2588 are separated by 22 nucleotides Dsui_2588 and Dsui_2589 are separated by 10 nucleotides
Dsui_2585: Dsui_2585 - type IV secretory pathway, component VirB8, at 2,738,371 to 2,739,075
_2585
Dsui_2586: Dsui_2586 - type IV secretory pathway, VirB9 component, at 2,739,072 to 2,740,058
_2586
Dsui_2587: Dsui_2587 - type IV secretory pathway, VirB10 component, at 2,740,060 to 2,741,385
_2587
Dsui_2588: Dsui_2588 - type IV secretory pathway, VirB9 component, at 2,741,408 to 2,742,262
_2588
Dsui_2589: Dsui_2589 - type II secretory pathway, component PulD, at 2,742,273 to 2,743,994
_2589
Position (kb)
2740
2741
2742 Strain fitness (log2 ratio)
-2
-1
0
1 at 2739.138 kb on - strand at 2739.165 kb on + strand at 2739.171 kb on - strand, within Dsui_2586 at 2739.258 kb on - strand, within Dsui_2586 at 2739.258 kb on - strand, within Dsui_2586 at 2739.289 kb on + strand, within Dsui_2586 at 2739.361 kb on + strand, within Dsui_2586 at 2739.427 kb on + strand, within Dsui_2586 at 2739.430 kb on - strand, within Dsui_2586 at 2739.773 kb on - strand, within Dsui_2586 at 2739.899 kb on + strand, within Dsui_2586 at 2739.942 kb on - strand, within Dsui_2586 at 2740.011 kb on - strand at 2740.069 kb on - strand at 2740.219 kb on - strand, within Dsui_2587 at 2740.285 kb on - strand, within Dsui_2587 at 2740.285 kb on - strand, within Dsui_2587 at 2740.362 kb on - strand, within Dsui_2587 at 2740.471 kb on + strand at 2740.480 kb on - strand, within Dsui_2587 at 2740.508 kb on - strand, within Dsui_2587 at 2740.541 kb on + strand, within Dsui_2587 at 2740.572 kb on - strand, within Dsui_2587 at 2740.572 kb on - strand, within Dsui_2587 at 2740.631 kb on - strand, within Dsui_2587 at 2740.690 kb on - strand, within Dsui_2587 at 2740.741 kb on - strand, within Dsui_2587 at 2740.843 kb on + strand, within Dsui_2587 at 2740.843 kb on + strand, within Dsui_2587 at 2740.850 kb on + strand, within Dsui_2587 at 2740.851 kb on - strand, within Dsui_2587 at 2740.902 kb on - strand, within Dsui_2587 at 2740.964 kb on - strand, within Dsui_2587 at 2740.978 kb on + strand, within Dsui_2587 at 2740.986 kb on - strand, within Dsui_2587 at 2741.077 kb on + strand, within Dsui_2587 at 2741.077 kb on + strand, within Dsui_2587 at 2741.194 kb on + strand, within Dsui_2587 at 2741.254 kb on + strand at 2741.266 kb on - strand at 2741.300 kb on + strand at 2741.308 kb on - strand at 2741.310 kb on + strand at 2741.318 kb on - strand at 2741.380 kb on + strand at 2741.931 kb on - strand, within Dsui_2588 at 2742.097 kb on + strand, within Dsui_2588 at 2742.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 2,739,138 - -0.9 2,739,165 + -0.9 2,739,171 - Dsui_2586 0.10 +0.7 2,739,258 - Dsui_2586 0.19 -0.3 2,739,258 - Dsui_2586 0.19 +0.7 2,739,289 + Dsui_2586 0.22 -0.9 2,739,361 + Dsui_2586 0.29 +0.7 2,739,427 + Dsui_2586 0.36 +0.7 2,739,430 - Dsui_2586 0.36 -0.9 2,739,773 - Dsui_2586 0.71 -0.3 2,739,899 + Dsui_2586 0.84 -0.9 2,739,942 - Dsui_2586 0.88 +0.7 2,740,011 - -0.3 2,740,069 - -0.3 2,740,219 - Dsui_2587 0.12 +0.7 2,740,285 - Dsui_2587 0.17 -0.3 2,740,285 - Dsui_2587 0.17 -2.1 2,740,362 - Dsui_2587 0.23 -1.1 2,740,471 + +0.7 2,740,480 - Dsui_2587 0.32 -0.9 2,740,508 - Dsui_2587 0.34 -0.9 2,740,541 + Dsui_2587 0.36 +0.7 2,740,572 - Dsui_2587 0.39 -0.3 2,740,572 - Dsui_2587 0.39 +0.7 2,740,631 - Dsui_2587 0.43 +0.7 2,740,690 - Dsui_2587 0.48 +0.7 2,740,741 - Dsui_2587 0.51 -2.3 2,740,843 + Dsui_2587 0.59 +0.7 2,740,843 + Dsui_2587 0.59 -0.3 2,740,850 + Dsui_2587 0.60 -0.3 2,740,851 - Dsui_2587 0.60 -0.9 2,740,902 - Dsui_2587 0.63 +0.7 2,740,964 - Dsui_2587 0.68 -0.9 2,740,978 + Dsui_2587 0.69 +0.7 2,740,986 - Dsui_2587 0.70 -0.3 2,741,077 + Dsui_2587 0.77 -0.9 2,741,077 + Dsui_2587 0.77 +0.7 2,741,194 + Dsui_2587 0.86 -0.9 2,741,254 + +0.7 2,741,266 - +0.7 2,741,300 + -0.3 2,741,308 - -1.6 2,741,310 + -0.3 2,741,318 - -0.3 2,741,380 + +0.7 2,741,931 - Dsui_2588 0.61 -0.3 2,742,097 + Dsui_2588 0.81 -0.3 2,742,240 - -0.9
Or see this region's nucleotide sequence