Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2347 and Dsui_2348 are separated by 202 nucleotides Dsui_2348 and Dsui_2349 are separated by 294 nucleotides Dsui_2349 and Dsui_2350 are separated by 141 nucleotides Dsui_2350 and Dsui_2351 overlap by 50 nucleotides
Dsui_2347: Dsui_2347 - aconitate hydratase 1, at 2,498,781 to 2,501,477
_2347
Dsui_2348: Dsui_2348 - hypothetical protein, at 2,501,680 to 2,502,048
_2348
Dsui_2349: Dsui_2349 - Zn-dependent hydrolase, glyoxylase, at 2,502,343 to 2,503,311
_2349
Dsui_2350: Dsui_2350 - putative transcriptional regulator, at 2,503,453 to 2,503,917
_2350
Dsui_2351: Dsui_2351 - uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein, at 2,503,868 to 2,504,242
_2351
Position (kb)
2502
2503
2504 Strain fitness (log2 ratio)
-2
-1
0
1 at 2501.522 kb on - strand at 2501.655 kb on + strand at 2501.663 kb on - strand at 2501.663 kb on - strand at 2501.725 kb on - strand, within Dsui_2348 at 2501.731 kb on - strand, within Dsui_2348 at 2501.769 kb on - strand at 2501.770 kb on - strand, within Dsui_2348 at 2501.780 kb on - strand, within Dsui_2348 at 2501.809 kb on - strand, within Dsui_2348 at 2501.895 kb on + strand at 2502.038 kb on - strand at 2502.038 kb on - strand at 2502.140 kb on + strand at 2502.216 kb on - strand at 2502.317 kb on - strand at 2502.319 kb on - strand at 2502.334 kb on + strand at 2502.397 kb on - strand at 2502.436 kb on - strand at 2502.436 kb on - strand at 2502.461 kb on - strand, within Dsui_2349 at 2502.496 kb on - strand, within Dsui_2349 at 2502.637 kb on - strand, within Dsui_2349 at 2502.668 kb on - strand, within Dsui_2349 at 2502.896 kb on + strand at 2502.904 kb on - strand, within Dsui_2349 at 2502.907 kb on + strand, within Dsui_2349 at 2502.912 kb on + strand at 2502.938 kb on - strand at 2502.958 kb on - strand, within Dsui_2349 at 2503.001 kb on - strand, within Dsui_2349 at 2503.001 kb on - strand, within Dsui_2349 at 2503.042 kb on - strand, within Dsui_2349 at 2503.076 kb on - strand, within Dsui_2349 at 2503.106 kb on + strand, within Dsui_2349 at 2503.246 kb on - strand at 2503.257 kb on - strand at 2503.257 kb on - strand at 2503.308 kb on - strand at 2503.354 kb on + strand at 2503.515 kb on + strand, within Dsui_2350 at 2503.539 kb on + strand at 2503.681 kb on + strand, within Dsui_2350 at 2503.725 kb on + strand at 2503.812 kb on + strand at 2503.951 kb on + strand at 2504.091 kb on + strand at 2504.091 kb on + strand at 2504.126 kb on + strand at 2504.136 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 2,501,522 - -0.2 2,501,655 + -0.2 2,501,663 - -0.6 2,501,663 - -0.8 2,501,725 - Dsui_2348 0.12 -1.2 2,501,731 - Dsui_2348 0.14 -1.9 2,501,769 - -0.8 2,501,770 - Dsui_2348 0.24 -1.8 2,501,780 - Dsui_2348 0.27 -1.5 2,501,809 - Dsui_2348 0.35 +0.8 2,501,895 + +0.8 2,502,038 - -1.5 2,502,038 - +0.8 2,502,140 + +0.8 2,502,216 - -0.2 2,502,317 - -0.8 2,502,319 - -0.8 2,502,334 + +0.8 2,502,397 - +0.8 2,502,436 - -0.5 2,502,436 - +0.8 2,502,461 - Dsui_2349 0.12 -1.2 2,502,496 - Dsui_2349 0.16 +0.8 2,502,637 - Dsui_2349 0.30 -0.2 2,502,668 - Dsui_2349 0.34 -1.8 2,502,896 + -0.2 2,502,904 - Dsui_2349 0.58 -1.2 2,502,907 + Dsui_2349 0.58 -1.8 2,502,912 + +0.8 2,502,938 - +0.8 2,502,958 - Dsui_2349 0.63 -0.2 2,503,001 - Dsui_2349 0.68 -0.2 2,503,001 - Dsui_2349 0.68 -0.8 2,503,042 - Dsui_2349 0.72 -0.8 2,503,076 - Dsui_2349 0.76 -1.8 2,503,106 + Dsui_2349 0.79 -0.8 2,503,246 - -1.5 2,503,257 - +0.8 2,503,257 - +0.8 2,503,308 - +0.8 2,503,354 + -2.0 2,503,515 + Dsui_2350 0.13 +0.8 2,503,539 + +0.8 2,503,681 + Dsui_2350 0.49 -0.8 2,503,725 + +0.8 2,503,812 + +0.8 2,503,951 + -0.8 2,504,091 + +0.8 2,504,091 + -0.2 2,504,126 + -0.2 2,504,136 + +0.8
Or see this region's nucleotide sequence