Strain Fitness in Dechlorosoma suillum PS around Dsui_2222

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2221 and Dsui_2222 are separated by 68 nucleotidesDsui_2222 and Dsui_2223 are separated by 58 nucleotides Dsui_2221: Dsui_2221 - putative ATPase, at 2,361,593 to 2,362,708 _2221 Dsui_2222: Dsui_2222 - type II secretory pathway, component PulD, at 2,362,777 to 2,363,682 _2222 Dsui_2223: Dsui_2223 - putative ATP-dependent protease, at 2,363,741 to 2,366,266 _2223 Position (kb) 2362 2363 2364Strain fitness (log2 ratio) -2 -1 0 1at 2361.833 kb on - strandat 2361.917 kb on + strand, within Dsui_2221at 2362.164 kb on + strand, within Dsui_2221at 2362.233 kb on + strand, within Dsui_2221at 2362.233 kb on + strand, within Dsui_2221at 2362.302 kb on + strand, within Dsui_2221at 2362.325 kb on - strandat 2362.475 kb on + strand, within Dsui_2221at 2362.604 kb on + strandat 2362.606 kb on + strandat 2362.606 kb on + strandat 2362.614 kb on - strandat 2362.614 kb on - strandat 2362.774 kb on + strandat 2362.808 kb on + strandat 2362.818 kb on + strandat 2362.847 kb on - strandat 2362.851 kb on + strandat 2362.985 kb on + strand, within Dsui_2222at 2363.048 kb on + strand, within Dsui_2222at 2363.058 kb on + strand, within Dsui_2222at 2363.073 kb on - strand, within Dsui_2222at 2363.222 kb on + strand, within Dsui_2222at 2363.222 kb on + strand, within Dsui_2222at 2363.361 kb on + strand, within Dsui_2222at 2363.420 kb on - strand, within Dsui_2222at 2363.426 kb on + strand, within Dsui_2222at 2363.473 kb on + strand, within Dsui_2222at 2363.513 kb on + strand, within Dsui_2222at 2363.729 kb on + strandat 2363.774 kb on + strandat 2363.837 kb on - strandat 2363.837 kb on - strandat 2363.854 kb on + strandat 2363.861 kb on + strandat 2363.915 kb on + strandat 2363.971 kb on - strandat 2363.993 kb on - strandat 2364.050 kb on - strandat 2364.264 kb on - strandat 2364.319 kb on + strand, within Dsui_2223at 2364.351 kb on - strandat 2364.362 kb on - strand, within Dsui_2223at 2364.415 kb on - strand, within Dsui_2223at 2364.463 kb on + strand, within Dsui_2223at 2364.528 kb on - strandat 2364.529 kb on + strandat 2364.558 kb on - strandat 2364.572 kb on + strand, within Dsui_2223at 2364.597 kb on + strand, within Dsui_2223

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,361,833 - +0.9
2,361,917 + Dsui_2221 0.29 +0.0
2,362,164 + Dsui_2221 0.51 -1.0
2,362,233 + Dsui_2221 0.57 -0.1
2,362,233 + Dsui_2221 0.57 -0.0
2,362,302 + Dsui_2221 0.64 -0.7
2,362,325 - +0.9
2,362,475 + Dsui_2221 0.79 +0.4
2,362,604 + -0.1
2,362,606 + -0.8
2,362,606 + -0.3
2,362,614 - +0.9
2,362,614 - +0.9
2,362,774 + -0.7
2,362,808 + -0.0
2,362,818 + -0.1
2,362,847 - +0.9
2,362,851 + +0.1
2,362,985 + Dsui_2222 0.23 +0.2
2,363,048 + Dsui_2222 0.30 -0.3
2,363,058 + Dsui_2222 0.31 -0.1
2,363,073 - Dsui_2222 0.33 -0.7
2,363,222 + Dsui_2222 0.49 -0.4
2,363,222 + Dsui_2222 0.49 -0.1
2,363,361 + Dsui_2222 0.64 -0.3
2,363,420 - Dsui_2222 0.71 +0.9
2,363,426 + Dsui_2222 0.72 +0.8
2,363,473 + Dsui_2222 0.77 -0.2
2,363,513 + Dsui_2222 0.81 +0.2
2,363,729 + +0.3
2,363,774 + -0.3
2,363,837 - -0.7
2,363,837 - +0.9
2,363,854 + -0.3
2,363,861 + -0.1
2,363,915 + -0.5
2,363,971 - +0.9
2,363,993 - +0.9
2,364,050 - +0.9
2,364,264 - +0.9
2,364,319 + Dsui_2223 0.23 -0.2
2,364,351 - +0.9
2,364,362 - Dsui_2223 0.25 -1.4
2,364,415 - Dsui_2223 0.27 -2.1
2,364,463 + Dsui_2223 0.29 -0.5
2,364,528 - -0.1
2,364,529 + -0.1
2,364,558 - -0.7
2,364,572 + Dsui_2223 0.33 -0.1
2,364,597 + Dsui_2223 0.34 -0.6

Or see this region's nucleotide sequence