Strain Fitness in Dechlorosoma suillum PS around Dsui_2207

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2205 and Dsui_2206 are separated by 177 nucleotidesDsui_2206 and Dsui_2207 are separated by 37 nucleotidesDsui_2207 and Dsui_2208 are separated by 101 nucleotides Dsui_2205: Dsui_2205 - aconitate hydratase 2, at 2,342,477 to 2,345,074 _2205 Dsui_2206: Dsui_2206 - putative rRNA methylase SpoU family, at 2,345,252 to 2,345,800 _2206 Dsui_2207: Dsui_2207 - uncharacterized protein involved in response to NO, at 2,345,838 to 2,346,998 _2207 Dsui_2208: Dsui_2208 - citrate lyase beta subunit, at 2,347,100 to 2,348,107 _2208 Position (kb) 2345 2346 2347Strain fitness (log2 ratio) -3 -2 -1 0 1at 2345.091 kb on - strandat 2345.218 kb on + strandat 2345.218 kb on + strandat 2345.257 kb on - strandat 2345.292 kb on + strandat 2345.300 kb on - strandat 2345.300 kb on - strandat 2345.372 kb on + strand, within Dsui_2206at 2345.380 kb on - strand, within Dsui_2206at 2345.449 kb on + strand, within Dsui_2206at 2345.465 kb on - strand, within Dsui_2206at 2345.467 kb on - strand, within Dsui_2206at 2345.499 kb on + strand, within Dsui_2206at 2345.521 kb on + strand, within Dsui_2206at 2345.558 kb on + strand, within Dsui_2206at 2345.558 kb on + strand, within Dsui_2206at 2345.558 kb on + strand, within Dsui_2206at 2345.558 kb on + strand, within Dsui_2206at 2345.565 kb on + strand, within Dsui_2206at 2345.692 kb on - strand, within Dsui_2206at 2345.702 kb on + strand, within Dsui_2206at 2345.734 kb on - strand, within Dsui_2206at 2345.759 kb on - strandat 2345.838 kb on - strandat 2345.908 kb on - strandat 2345.908 kb on - strandat 2345.953 kb on - strandat 2346.024 kb on + strand, within Dsui_2207at 2346.031 kb on - strand, within Dsui_2207at 2346.131 kb on + strand, within Dsui_2207at 2346.131 kb on + strand, within Dsui_2207at 2346.131 kb on + strand, within Dsui_2207at 2346.155 kb on + strandat 2346.155 kb on + strand, within Dsui_2207at 2346.193 kb on + strandat 2346.193 kb on - strand, within Dsui_2207at 2346.237 kb on + strand, within Dsui_2207at 2346.238 kb on - strand, within Dsui_2207at 2346.254 kb on - strand, within Dsui_2207at 2346.254 kb on - strand, within Dsui_2207at 2346.299 kb on + strand, within Dsui_2207at 2346.300 kb on + strand, within Dsui_2207at 2346.308 kb on - strand, within Dsui_2207at 2346.473 kb on + strand, within Dsui_2207at 2346.473 kb on + strand, within Dsui_2207at 2346.481 kb on - strandat 2346.481 kb on - strand, within Dsui_2207at 2346.481 kb on - strand, within Dsui_2207at 2346.481 kb on - strand, within Dsui_2207at 2346.481 kb on - strand, within Dsui_2207at 2346.481 kb on - strand, within Dsui_2207at 2346.482 kb on - strand, within Dsui_2207at 2346.592 kb on + strand, within Dsui_2207at 2346.623 kb on - strand, within Dsui_2207at 2346.735 kb on + strand, within Dsui_2207at 2346.735 kb on + strand, within Dsui_2207at 2346.738 kb on - strand, within Dsui_2207at 2346.784 kb on + strand, within Dsui_2207at 2346.857 kb on + strand, within Dsui_2207at 2346.915 kb on + strandat 2346.916 kb on + strandat 2346.920 kb on + strandat 2347.001 kb on - strandat 2347.010 kb on - strandat 2347.023 kb on - strandat 2347.142 kb on + strandat 2347.408 kb on - strand, within Dsui_2208at 2347.454 kb on - strand, within Dsui_2208at 2347.510 kb on + strand, within Dsui_2208at 2347.611 kb on - strand, within Dsui_2208at 2347.703 kb on - strand, within Dsui_2208at 2347.744 kb on + strand, within Dsui_2208at 2347.754 kb on + strand, within Dsui_2208at 2347.885 kb on - strand, within Dsui_2208at 2347.984 kb on - strand, within Dsui_2208at 2347.989 kb on - strand, within Dsui_2208

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,345,091 - +0.9
2,345,218 + +0.9
2,345,218 + +0.9
2,345,257 - -0.7
2,345,292 + -0.1
2,345,300 - -1.4
2,345,300 - -0.5
2,345,372 + Dsui_2206 0.22 -1.4
2,345,380 - Dsui_2206 0.23 -0.7
2,345,449 + Dsui_2206 0.36 -0.7
2,345,465 - Dsui_2206 0.39 -2.1
2,345,467 - Dsui_2206 0.39 +0.9
2,345,499 + Dsui_2206 0.45 -3.4
2,345,521 + Dsui_2206 0.49 +0.9
2,345,558 + Dsui_2206 0.56 -0.1
2,345,558 + Dsui_2206 0.56 -2.9
2,345,558 + Dsui_2206 0.56 -1.1
2,345,558 + Dsui_2206 0.56 -0.9
2,345,565 + Dsui_2206 0.57 -2.4
2,345,692 - Dsui_2206 0.80 +0.9
2,345,702 + Dsui_2206 0.82 -0.4
2,345,734 - Dsui_2206 0.88 +0.9
2,345,759 - -0.7
2,345,838 - -1.9
2,345,908 - +0.9
2,345,908 - -1.1
2,345,953 - +0.9
2,346,024 + Dsui_2207 0.16 -1.9
2,346,031 - Dsui_2207 0.17 +0.9
2,346,131 + Dsui_2207 0.25 +0.9
2,346,131 + Dsui_2207 0.25 -0.1
2,346,131 + Dsui_2207 0.25 +0.9
2,346,155 + -0.1
2,346,155 + Dsui_2207 0.27 -0.1
2,346,193 + +0.9
2,346,193 - Dsui_2207 0.31 -1.7
2,346,237 + Dsui_2207 0.34 -0.1
2,346,238 - Dsui_2207 0.34 -1.1
2,346,254 - Dsui_2207 0.36 +0.9
2,346,254 - Dsui_2207 0.36 -1.7
2,346,299 + Dsui_2207 0.40 -2.3
2,346,300 + Dsui_2207 0.40 -1.4
2,346,308 - Dsui_2207 0.40 -0.7
2,346,473 + Dsui_2207 0.55 +0.9
2,346,473 + Dsui_2207 0.55 +0.9
2,346,481 - +0.9
2,346,481 - Dsui_2207 0.55 -0.7
2,346,481 - Dsui_2207 0.55 -1.1
2,346,481 - Dsui_2207 0.55 -0.7
2,346,481 - Dsui_2207 0.55 -0.7
2,346,481 - Dsui_2207 0.55 +0.9
2,346,482 - Dsui_2207 0.55 +0.9
2,346,592 + Dsui_2207 0.65 -0.1
2,346,623 - Dsui_2207 0.68 -0.1
2,346,735 + Dsui_2207 0.77 -0.7
2,346,735 + Dsui_2207 0.77 -0.7
2,346,738 - Dsui_2207 0.78 -1.7
2,346,784 + Dsui_2207 0.81 -0.1
2,346,857 + Dsui_2207 0.88 -2.9
2,346,915 + +0.9
2,346,916 + +0.9
2,346,920 + -1.4
2,347,001 - -1.4
2,347,010 - -1.1
2,347,023 - -0.7
2,347,142 + +0.9
2,347,408 - Dsui_2208 0.31 +0.4
2,347,454 - Dsui_2208 0.35 -0.5
2,347,510 + Dsui_2208 0.41 -0.1
2,347,611 - Dsui_2208 0.51 -0.2
2,347,703 - Dsui_2208 0.60 -0.4
2,347,744 + Dsui_2208 0.64 -0.1
2,347,754 + Dsui_2208 0.65 -1.1
2,347,885 - Dsui_2208 0.78 -0.1
2,347,984 - Dsui_2208 0.88 -0.2
2,347,989 - Dsui_2208 0.88 +0.2

Or see this region's nucleotide sequence