Strain Fitness in Dechlorosoma suillum PS around Dsui_2166

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2164 and Dsui_2165 are separated by 264 nucleotidesDsui_2165 and Dsui_2166 overlap by 14 nucleotidesDsui_2166 and Dsui_2167 are separated by 101 nucleotides Dsui_2164: Dsui_2164 - signal transduction histidine kinase, at 2,298,920 to 2,300,968 _2164 Dsui_2165: Dsui_2165 - RNA polymerase sigma factor, sigma-70 family, at 2,301,233 to 2,301,748 _2165 Dsui_2166: Dsui_2166 - Fe2+-dicitrate sensor, membrane component, at 2,301,735 to 2,302,670 _2166 Dsui_2167: Dsui_2167 - TonB-dependent siderophore receptor, at 2,302,772 to 2,305,192 _2167 Position (kb) 2301 2302 2303Strain fitness (log2 ratio) -2 -1 0 1at 2300.781 kb on - strandat 2300.866 kb on + strandat 2300.890 kb on - strandat 2301.188 kb on - strandat 2301.429 kb on - strandat 2301.447 kb on + strand, within Dsui_2165at 2301.502 kb on - strandat 2301.520 kb on + strand, within Dsui_2165at 2301.616 kb on + strand, within Dsui_2165at 2301.906 kb on + strand, within Dsui_2166at 2301.931 kb on + strand, within Dsui_2166at 2301.939 kb on - strandat 2301.939 kb on - strandat 2302.360 kb on + strand, within Dsui_2166at 2302.431 kb on + strandat 2302.586 kb on + strandat 2302.622 kb on - strandat 2302.648 kb on + strandat 2302.666 kb on + strandat 2302.774 kb on + strandat 2302.782 kb on - strandat 2302.782 kb on - strandat 2302.832 kb on + strandat 2302.928 kb on + strandat 2303.099 kb on + strand, within Dsui_2167at 2303.100 kb on + strand, within Dsui_2167at 2303.264 kb on + strand, within Dsui_2167at 2303.411 kb on + strandat 2303.418 kb on + strandat 2303.456 kb on + strand, within Dsui_2167at 2303.499 kb on - strandat 2303.555 kb on + strand, within Dsui_2167at 2303.602 kb on - strandat 2303.609 kb on + strand, within Dsui_2167at 2303.646 kb on + strand, within Dsui_2167

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,300,781 - +1.0
2,300,866 + +0.0
2,300,890 - +1.0
2,301,188 - -0.6
2,301,429 - -0.6
2,301,447 + Dsui_2165 0.41 +1.0
2,301,502 - +1.0
2,301,520 + Dsui_2165 0.56 +0.0
2,301,616 + Dsui_2165 0.74 +1.0
2,301,906 + Dsui_2166 0.18 -2.0
2,301,931 + Dsui_2166 0.21 +1.0
2,301,939 - +1.0
2,301,939 - +0.0
2,302,360 + Dsui_2166 0.67 +0.4
2,302,431 + +1.0
2,302,586 + -1.0
2,302,622 - +0.0
2,302,648 + -2.2
2,302,666 + +1.0
2,302,774 + +1.0
2,302,782 - +0.1
2,302,782 - -0.6
2,302,832 + +0.0
2,302,928 + -1.6
2,303,099 + Dsui_2167 0.14 -0.6
2,303,100 + Dsui_2167 0.14 +1.0
2,303,264 + Dsui_2167 0.20 +0.0
2,303,411 + +1.0
2,303,418 + +1.0
2,303,456 + Dsui_2167 0.28 -0.6
2,303,499 - -0.6
2,303,555 + Dsui_2167 0.32 -1.0
2,303,602 - -1.0
2,303,609 + Dsui_2167 0.35 -0.6
2,303,646 + Dsui_2167 0.36 +0.0

Or see this region's nucleotide sequence