Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2164 and Dsui_2165 are separated by 264 nucleotides Dsui_2165 and Dsui_2166 overlap by 14 nucleotides Dsui_2166 and Dsui_2167 are separated by 101 nucleotides
Dsui_2164: Dsui_2164 - signal transduction histidine kinase, at 2,298,920 to 2,300,968
_2164
Dsui_2165: Dsui_2165 - RNA polymerase sigma factor, sigma-70 family, at 2,301,233 to 2,301,748
_2165
Dsui_2166: Dsui_2166 - Fe2+-dicitrate sensor, membrane component, at 2,301,735 to 2,302,670
_2166
Dsui_2167: Dsui_2167 - TonB-dependent siderophore receptor, at 2,302,772 to 2,305,192
_2167
Position (kb)
2301
2302
2303 Strain fitness (log2 ratio)
-2
-1
0
1 at 2300.781 kb on - strand at 2300.866 kb on + strand at 2300.890 kb on - strand at 2301.188 kb on - strand at 2301.429 kb on - strand at 2301.447 kb on + strand, within Dsui_2165 at 2301.502 kb on - strand at 2301.520 kb on + strand, within Dsui_2165 at 2301.616 kb on + strand, within Dsui_2165 at 2301.906 kb on + strand, within Dsui_2166 at 2301.931 kb on + strand, within Dsui_2166 at 2301.939 kb on - strand at 2301.939 kb on - strand at 2302.360 kb on + strand, within Dsui_2166 at 2302.431 kb on + strand at 2302.586 kb on + strand at 2302.622 kb on - strand at 2302.648 kb on + strand at 2302.666 kb on + strand at 2302.774 kb on + strand at 2302.782 kb on - strand at 2302.782 kb on - strand at 2302.832 kb on + strand at 2302.928 kb on + strand at 2303.099 kb on + strand, within Dsui_2167 at 2303.100 kb on + strand, within Dsui_2167 at 2303.264 kb on + strand, within Dsui_2167 at 2303.411 kb on + strand at 2303.418 kb on + strand at 2303.456 kb on + strand, within Dsui_2167 at 2303.499 kb on - strand at 2303.555 kb on + strand, within Dsui_2167 at 2303.602 kb on - strand at 2303.609 kb on + strand, within Dsui_2167 at 2303.646 kb on + strand, within Dsui_2167
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 2,300,781 - +1.0 2,300,866 + +0.0 2,300,890 - +1.0 2,301,188 - -0.6 2,301,429 - -0.6 2,301,447 + Dsui_2165 0.41 +1.0 2,301,502 - +1.0 2,301,520 + Dsui_2165 0.56 +0.0 2,301,616 + Dsui_2165 0.74 +1.0 2,301,906 + Dsui_2166 0.18 -2.0 2,301,931 + Dsui_2166 0.21 +1.0 2,301,939 - +1.0 2,301,939 - +0.0 2,302,360 + Dsui_2166 0.67 +0.4 2,302,431 + +1.0 2,302,586 + -1.0 2,302,622 - +0.0 2,302,648 + -2.2 2,302,666 + +1.0 2,302,774 + +1.0 2,302,782 - +0.1 2,302,782 - -0.6 2,302,832 + +0.0 2,302,928 + -1.6 2,303,099 + Dsui_2167 0.14 -0.6 2,303,100 + Dsui_2167 0.14 +1.0 2,303,264 + Dsui_2167 0.20 +0.0 2,303,411 + +1.0 2,303,418 + +1.0 2,303,456 + Dsui_2167 0.28 -0.6 2,303,499 - -0.6 2,303,555 + Dsui_2167 0.32 -1.0 2,303,602 - -1.0 2,303,609 + Dsui_2167 0.35 -0.6 2,303,646 + Dsui_2167 0.36 +0.0
Or see this region's nucleotide sequence