Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1865 and Dsui_1866 are separated by 39 nucleotides Dsui_1866 and Dsui_1867 overlap by 1 nucleotides Dsui_1867 and Dsui_1868 are separated by 190 nucleotides
Dsui_1865: Dsui_1865 - PAS domain S-box, at 1,959,017 to 1,962,097
_1865
Dsui_1866: Dsui_1866 - CheY-like receiver domain-containing protein, at 1,962,137 to 1,962,496
_1866
Dsui_1867: Dsui_1867 - signal transduction histidine kinase, at 1,962,496 to 1,964,172
_1867
Dsui_1868: Dsui_1868 - HD-GYP domain-containing protein, at 1,964,363 to 1,965,607
_1868
Position (kb) 1962
1963
1964
1965 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1961.608 kb on + strand, within Dsui_1865 at 1961.608 kb on + strand, within Dsui_1865 at 1961.885 kb on - strand at 1961.915 kb on - strand at 1962.075 kb on + strand at 1962.148 kb on + strand at 1962.166 kb on + strand at 1962.237 kb on + strand, within Dsui_1866 at 1962.318 kb on - strand, within Dsui_1866 at 1962.477 kb on + strand at 1962.520 kb on - strand at 1962.530 kb on - strand at 1962.612 kb on + strand at 1962.621 kb on - strand at 1962.637 kb on - strand at 1962.767 kb on + strand, within Dsui_1867 at 1962.829 kb on + strand at 1962.895 kb on - strand, within Dsui_1867 at 1962.944 kb on + strand, within Dsui_1867 at 1962.944 kb on + strand at 1963.051 kb on - strand at 1963.104 kb on + strand, within Dsui_1867 at 1963.134 kb on - strand, within Dsui_1867 at 1963.143 kb on + strand, within Dsui_1867 at 1963.151 kb on + strand, within Dsui_1867 at 1963.151 kb on - strand, within Dsui_1867 at 1963.202 kb on + strand at 1963.204 kb on - strand at 1963.210 kb on - strand, within Dsui_1867 at 1963.374 kb on - strand, within Dsui_1867 at 1963.430 kb on - strand at 1963.479 kb on + strand, within Dsui_1867 at 1963.580 kb on + strand, within Dsui_1867 at 1963.580 kb on + strand, within Dsui_1867 at 1963.580 kb on + strand at 1963.613 kb on - strand, within Dsui_1867 at 1963.613 kb on - strand at 1963.720 kb on + strand, within Dsui_1867 at 1963.720 kb on + strand, within Dsui_1867 at 1963.774 kb on + strand at 1963.774 kb on + strand, within Dsui_1867 at 1963.774 kb on + strand at 1963.782 kb on - strand, within Dsui_1867 at 1963.805 kb on - strand, within Dsui_1867 at 1963.961 kb on - strand, within Dsui_1867 at 1964.003 kb on - strand, within Dsui_1867 at 1964.003 kb on - strand, within Dsui_1867 at 1964.081 kb on + strand at 1964.181 kb on + strand at 1964.182 kb on - strand at 1964.354 kb on + strand at 1964.360 kb on + strand at 1964.401 kb on + strand at 1964.535 kb on + strand, within Dsui_1868 at 1964.559 kb on - strand, within Dsui_1868 at 1964.674 kb on - strand, within Dsui_1868 at 1964.812 kb on - strand, within Dsui_1868 at 1964.940 kb on + strand, within Dsui_1868 at 1964.948 kb on - strand at 1964.985 kb on - strand, within Dsui_1868 at 1965.020 kb on - strand, within Dsui_1868 at 1965.024 kb on + strand, within Dsui_1868 at 1965.085 kb on + strand, within Dsui_1868 at 1965.085 kb on + strand, within Dsui_1868
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 1,961,608 + Dsui_1865 0.84 -0.6 1,961,608 + Dsui_1865 0.84 -0.1 1,961,885 - +0.9 1,961,915 - -0.6 1,962,075 + -1.1 1,962,148 + +0.9 1,962,166 + +0.9 1,962,237 + Dsui_1866 0.28 -1.1 1,962,318 - Dsui_1866 0.50 -1.9 1,962,477 + -1.4 1,962,520 - -1.1 1,962,530 - -0.9 1,962,612 + -0.1 1,962,621 - -0.6 1,962,637 - -1.2 1,962,767 + Dsui_1867 0.16 -1.4 1,962,829 + +0.9 1,962,895 - Dsui_1867 0.24 +0.2 1,962,944 + Dsui_1867 0.27 -1.6 1,962,944 + +0.9 1,963,051 - +0.9 1,963,104 + Dsui_1867 0.36 -0.6 1,963,134 - Dsui_1867 0.38 -1.1 1,963,143 + Dsui_1867 0.39 +0.9 1,963,151 + Dsui_1867 0.39 +0.9 1,963,151 - Dsui_1867 0.39 -1.9 1,963,202 + -0.6 1,963,204 - +1.9 1,963,210 - Dsui_1867 0.43 -0.1 1,963,374 - Dsui_1867 0.52 -2.4 1,963,430 - +0.9 1,963,479 + Dsui_1867 0.59 -1.1 1,963,580 + Dsui_1867 0.65 +0.9 1,963,580 + Dsui_1867 0.65 -1.6 1,963,580 + +0.9 1,963,613 - Dsui_1867 0.67 -1.4 1,963,613 - +0.9 1,963,720 + Dsui_1867 0.73 -1.9 1,963,720 + Dsui_1867 0.73 -1.4 1,963,774 + +0.9 1,963,774 + Dsui_1867 0.76 +0.9 1,963,774 + +0.9 1,963,782 - Dsui_1867 0.77 +0.9 1,963,805 - Dsui_1867 0.78 -0.6 1,963,961 - Dsui_1867 0.87 -0.9 1,964,003 - Dsui_1867 0.90 +0.9 1,964,003 - Dsui_1867 0.90 -0.1 1,964,081 + -0.1 1,964,181 + -0.1 1,964,182 - +0.9 1,964,354 + -1.1 1,964,360 + +0.6 1,964,401 + -0.3 1,964,535 + Dsui_1868 0.14 +0.9 1,964,559 - Dsui_1868 0.16 -1.6 1,964,674 - Dsui_1868 0.25 -1.2 1,964,812 - Dsui_1868 0.36 -0.6 1,964,940 + Dsui_1868 0.46 +0.9 1,964,948 - +0.9 1,964,985 - Dsui_1868 0.50 -1.1 1,965,020 - Dsui_1868 0.53 -0.1 1,965,024 + Dsui_1868 0.53 -0.4 1,965,085 + Dsui_1868 0.58 -0.3 1,965,085 + Dsui_1868 0.58 +0.9
Or see this region's nucleotide sequence