Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1835 and Dsui_1836 are separated by 185 nucleotides Dsui_1836 and Dsui_1837 are separated by 11 nucleotides Dsui_1837 and Dsui_1838 are separated by 1 nucleotides
Dsui_1835: Dsui_1835 - glycosyltransferase, at 1,933,541 to 1,934,737
_1835
Dsui_1836: Dsui_1836 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,934,923 to 1,936,125
_1836
Dsui_1837: Dsui_1837 - cation/cationic drug transporter, at 1,936,137 to 1,936,463
_1837
Dsui_1838: Dsui_1838 - spermidine synthase, at 1,936,465 to 1,937,229
_1838
Position (kb)
1934
1935
1936
1937 Strain fitness (log2 ratio)
-2
-1
0
1 at 1933.986 kb on - strand, within Dsui_1835 at 1933.997 kb on + strand, within Dsui_1835 at 1934.067 kb on + strand at 1934.231 kb on - strand at 1934.240 kb on + strand, within Dsui_1835 at 1934.340 kb on + strand, within Dsui_1835 at 1934.340 kb on + strand, within Dsui_1835 at 1934.386 kb on + strand, within Dsui_1835 at 1934.386 kb on + strand, within Dsui_1835 at 1934.394 kb on - strand, within Dsui_1835 at 1934.615 kb on + strand, within Dsui_1835 at 1934.623 kb on + strand at 1934.691 kb on + strand at 1934.699 kb on - strand at 1935.048 kb on + strand, within Dsui_1836 at 1935.048 kb on + strand, within Dsui_1836 at 1935.091 kb on - strand at 1935.263 kb on + strand, within Dsui_1836 at 1935.302 kb on + strand, within Dsui_1836 at 1935.352 kb on + strand, within Dsui_1836 at 1935.416 kb on + strand, within Dsui_1836 at 1935.421 kb on + strand, within Dsui_1836 at 1935.421 kb on + strand, within Dsui_1836 at 1935.466 kb on - strand, within Dsui_1836 at 1935.567 kb on - strand, within Dsui_1836 at 1935.569 kb on - strand, within Dsui_1836 at 1935.577 kb on + strand, within Dsui_1836 at 1935.839 kb on + strand, within Dsui_1836 at 1935.844 kb on + strand, within Dsui_1836 at 1936.198 kb on - strand, within Dsui_1837 at 1936.235 kb on - strand, within Dsui_1837 at 1936.277 kb on + strand at 1936.353 kb on + strand, within Dsui_1837 at 1936.361 kb on + strand, within Dsui_1837 at 1936.361 kb on + strand at 1936.383 kb on + strand, within Dsui_1837 at 1936.664 kb on - strand, within Dsui_1838 at 1936.712 kb on - strand, within Dsui_1838 at 1936.756 kb on - strand, within Dsui_1838 at 1936.758 kb on + strand, within Dsui_1838 at 1936.758 kb on + strand, within Dsui_1838 at 1936.848 kb on + strand, within Dsui_1838 at 1936.989 kb on - strand, within Dsui_1838 at 1937.110 kb on - strand, within Dsui_1838 at 1937.112 kb on + strand, within Dsui_1838
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 1,933,986 - Dsui_1835 0.37 -1.6 1,933,997 + Dsui_1835 0.38 -0.8 1,934,067 + -0.2 1,934,231 - +0.8 1,934,240 + Dsui_1835 0.58 +0.8 1,934,340 + Dsui_1835 0.67 -0.2 1,934,340 + Dsui_1835 0.67 +0.8 1,934,386 + Dsui_1835 0.71 -1.2 1,934,386 + Dsui_1835 0.71 +0.8 1,934,394 - Dsui_1835 0.71 -0.2 1,934,615 + Dsui_1835 0.90 +0.8 1,934,623 + -0.2 1,934,691 + +0.8 1,934,699 - +0.8 1,935,048 + Dsui_1836 0.10 -0.8 1,935,048 + Dsui_1836 0.10 +0.8 1,935,091 - -0.2 1,935,263 + Dsui_1836 0.28 -0.2 1,935,302 + Dsui_1836 0.32 -0.8 1,935,352 + Dsui_1836 0.36 -0.2 1,935,416 + Dsui_1836 0.41 -1.2 1,935,421 + Dsui_1836 0.41 -1.6 1,935,421 + Dsui_1836 0.41 -1.2 1,935,466 - Dsui_1836 0.45 +0.8 1,935,567 - Dsui_1836 0.54 +0.8 1,935,569 - Dsui_1836 0.54 -0.8 1,935,577 + Dsui_1836 0.54 -0.2 1,935,839 + Dsui_1836 0.76 +0.8 1,935,844 + Dsui_1836 0.77 +0.8 1,936,198 - Dsui_1837 0.19 -2.1 1,936,235 - Dsui_1837 0.30 -0.3 1,936,277 + +0.8 1,936,353 + Dsui_1837 0.66 +0.8 1,936,361 + Dsui_1837 0.69 -0.2 1,936,361 + +0.8 1,936,383 + Dsui_1837 0.75 -2.0 1,936,664 - Dsui_1838 0.26 -0.9 1,936,712 - Dsui_1838 0.32 -0.3 1,936,756 - Dsui_1838 0.38 -0.1 1,936,758 + Dsui_1838 0.38 -0.8 1,936,758 + Dsui_1838 0.38 -2.4 1,936,848 + Dsui_1838 0.50 -1.8 1,936,989 - Dsui_1838 0.68 -0.5 1,937,110 - Dsui_1838 0.84 +0.0 1,937,112 + Dsui_1838 0.85 -1.2
Or see this region's nucleotide sequence