Strain Fitness in Dechlorosoma suillum PS around Dsui_1832

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1831 and Dsui_1832 are separated by 148 nucleotidesDsui_1832 and Dsui_1833 are separated by 2 nucleotidesDsui_1833 and Dsui_1834 are separated by 187 nucleotides Dsui_1831: Dsui_1831 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 1,929,825 to 1,931,102 _1831 Dsui_1832: Dsui_1832 - nitrate ABC transporter, permease protein, at 1,931,251 to 1,932,141 _1832 Dsui_1833: Dsui_1833 - nitrate transport ATP-binding subunits C and D, at 1,932,144 to 1,932,944 _1833 Dsui_1834: Dsui_1834 - hypothetical protein, at 1,933,132 to 1,933,401 _1834 Position (kb) 1931 1932 1933Strain fitness (log2 ratio) -2 -1 0 1 2at 1930.274 kb on + strand, within Dsui_1831at 1930.274 kb on + strand, within Dsui_1831at 1930.299 kb on + strand, within Dsui_1831at 1930.304 kb on + strandat 1930.357 kb on - strand, within Dsui_1831at 1930.405 kb on + strandat 1930.449 kb on + strand, within Dsui_1831at 1930.497 kb on - strand, within Dsui_1831at 1930.573 kb on - strand, within Dsui_1831at 1930.710 kb on + strand, within Dsui_1831at 1930.739 kb on - strandat 1930.805 kb on - strand, within Dsui_1831at 1930.811 kb on - strand, within Dsui_1831at 1930.905 kb on + strand, within Dsui_1831at 1930.938 kb on - strand, within Dsui_1831at 1930.948 kb on + strandat 1930.970 kb on - strandat 1931.031 kb on - strandat 1931.031 kb on - strandat 1931.091 kb on - strandat 1931.106 kb on - strandat 1931.144 kb on + strandat 1931.156 kb on + strandat 1931.390 kb on - strandat 1931.570 kb on + strand, within Dsui_1832at 1931.765 kb on - strandat 1931.809 kb on - strand, within Dsui_1832at 1931.845 kb on - strandat 1931.863 kb on + strandat 1931.889 kb on + strand, within Dsui_1832at 1931.905 kb on + strand, within Dsui_1832at 1932.003 kb on - strand, within Dsui_1832at 1932.030 kb on + strand, within Dsui_1832at 1932.079 kb on - strandat 1932.098 kb on + strandat 1932.136 kb on - strandat 1932.161 kb on + strandat 1932.169 kb on - strandat 1932.233 kb on - strandat 1932.283 kb on + strand, within Dsui_1833at 1932.291 kb on - strandat 1932.317 kb on - strand, within Dsui_1833at 1932.414 kb on + strandat 1932.433 kb on + strand, within Dsui_1833at 1932.492 kb on - strandat 1932.518 kb on + strand, within Dsui_1833at 1932.522 kb on + strandat 1932.611 kb on + strand, within Dsui_1833at 1932.611 kb on + strand, within Dsui_1833at 1932.619 kb on - strandat 1932.619 kb on - strand, within Dsui_1833at 1932.631 kb on - strand, within Dsui_1833at 1932.705 kb on + strand, within Dsui_1833at 1932.933 kb on - strandat 1932.958 kb on - strandat 1932.986 kb on - strandat 1933.041 kb on + strandat 1933.049 kb on - strandat 1933.091 kb on - strandat 1933.109 kb on + strandat 1933.117 kb on - strandat 1933.127 kb on - strandat 1933.138 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,930,274 + Dsui_1831 0.35 -0.2
1,930,274 + Dsui_1831 0.35 -1.6
1,930,299 + Dsui_1831 0.37 -0.2
1,930,304 + +0.8
1,930,357 - Dsui_1831 0.42 -2.2
1,930,405 + +0.8
1,930,449 + Dsui_1831 0.49 -0.8
1,930,497 - Dsui_1831 0.53 -1.2
1,930,573 - Dsui_1831 0.59 +0.8
1,930,710 + Dsui_1831 0.69 +0.8
1,930,739 - +0.8
1,930,805 - Dsui_1831 0.77 -0.2
1,930,811 - Dsui_1831 0.77 +0.8
1,930,905 + Dsui_1831 0.85 +0.8
1,930,938 - Dsui_1831 0.87 +0.8
1,930,948 + -0.2
1,930,970 - -0.2
1,931,031 - +0.8
1,931,031 - -1.8
1,931,091 - -0.2
1,931,106 - -1.2
1,931,144 + +0.8
1,931,156 + +0.8
1,931,390 - +0.8
1,931,570 + Dsui_1832 0.36 -2.2
1,931,765 - -0.2
1,931,809 - Dsui_1832 0.63 -0.2
1,931,845 - +0.8
1,931,863 + +0.8
1,931,889 + Dsui_1832 0.72 -0.2
1,931,905 + Dsui_1832 0.73 -1.6
1,932,003 - Dsui_1832 0.84 +0.8
1,932,030 + Dsui_1832 0.87 -0.8
1,932,079 - +0.8
1,932,098 + -1.6
1,932,136 - -0.8
1,932,161 + +0.8
1,932,169 - -0.8
1,932,233 - +0.8
1,932,283 + Dsui_1833 0.17 -0.8
1,932,291 - +0.8
1,932,317 - Dsui_1833 0.22 -0.8
1,932,414 + +0.8
1,932,433 + Dsui_1833 0.36 +0.8
1,932,492 - -0.2
1,932,518 + Dsui_1833 0.47 -0.2
1,932,522 + +0.8
1,932,611 + Dsui_1833 0.58 -2.0
1,932,611 + Dsui_1833 0.58 -1.2
1,932,619 - +0.8
1,932,619 - Dsui_1833 0.59 -0.8
1,932,631 - Dsui_1833 0.61 -1.2
1,932,705 + Dsui_1833 0.70 -0.2
1,932,933 - +0.8
1,932,958 - +0.8
1,932,986 - -0.2
1,933,041 + -0.8
1,933,049 - -1.2
1,933,091 - -0.2
1,933,109 + +0.8
1,933,117 - +1.8
1,933,127 - +0.8
1,933,138 - -1.8

Or see this region's nucleotide sequence