Strain Fitness in Dechlorosoma suillum PS around Dsui_1583

Experiment: D-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1581 and Dsui_1582 are separated by 186 nucleotidesDsui_1582 and Dsui_1583 are separated by 65 nucleotidesDsui_1583 and Dsui_1584 are separated by 14 nucleotidesDsui_1584 and Dsui_1585 are separated by 122 nucleotides Dsui_1581: Dsui_1581 - response regulator, at 1,659,254 to 1,659,904 _1581 Dsui_1582: Dsui_1582 - Fe-S oxidoreductase, at 1,660,091 to 1,660,819 _1582 Dsui_1583: Dsui_1583 - (4Fe-4S) cluster-containing protein, at 1,660,885 to 1,662,297 _1583 Dsui_1584: Dsui_1584 - hypothetical protein, at 1,662,312 to 1,662,965 _1584 Dsui_1585: Dsui_1585 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,663,088 to 1,664,110 _1585 Position (kb) 1660 1661 1662 1663Strain fitness (log2 ratio) -3 -2 -1 0 1at 1659.907 kb on + strandat 1659.907 kb on - strandat 1660.143 kb on - strandat 1660.261 kb on - strand, within Dsui_1582at 1660.261 kb on - strand, within Dsui_1582at 1660.300 kb on - strand, within Dsui_1582at 1660.312 kb on + strand, within Dsui_1582at 1660.339 kb on - strand, within Dsui_1582at 1660.358 kb on - strand, within Dsui_1582at 1660.371 kb on + strand, within Dsui_1582at 1660.379 kb on - strand, within Dsui_1582at 1660.421 kb on - strand, within Dsui_1582at 1660.421 kb on - strand, within Dsui_1582at 1660.428 kb on + strand, within Dsui_1582at 1660.450 kb on + strand, within Dsui_1582at 1660.511 kb on - strand, within Dsui_1582at 1660.592 kb on + strand, within Dsui_1582at 1660.615 kb on - strand, within Dsui_1582at 1660.650 kb on - strand, within Dsui_1582at 1660.791 kb on - strandat 1660.835 kb on + strandat 1660.905 kb on + strandat 1660.937 kb on + strandat 1660.945 kb on - strandat 1660.963 kb on - strandat 1661.101 kb on - strand, within Dsui_1583at 1661.120 kb on + strand, within Dsui_1583at 1661.184 kb on + strand, within Dsui_1583at 1661.187 kb on - strand, within Dsui_1583at 1661.192 kb on - strand, within Dsui_1583at 1661.216 kb on + strand, within Dsui_1583at 1661.224 kb on - strand, within Dsui_1583at 1661.224 kb on - strand, within Dsui_1583at 1661.385 kb on + strand, within Dsui_1583at 1661.393 kb on - strand, within Dsui_1583at 1661.406 kb on + strand, within Dsui_1583at 1661.470 kb on - strandat 1661.708 kb on - strand, within Dsui_1583at 1661.851 kb on + strand, within Dsui_1583at 1661.911 kb on + strand, within Dsui_1583at 1661.913 kb on - strand, within Dsui_1583at 1661.919 kb on - strandat 1661.945 kb on + strand, within Dsui_1583at 1661.953 kb on - strand, within Dsui_1583at 1662.015 kb on + strand, within Dsui_1583at 1662.205 kb on - strandat 1662.231 kb on + strandat 1662.250 kb on + strandat 1662.275 kb on - strandat 1662.296 kb on + strandat 1662.304 kb on - strandat 1662.489 kb on + strand, within Dsui_1584at 1662.797 kb on + strand, within Dsui_1584at 1662.820 kb on + strand, within Dsui_1584

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
remove
1,659,907 + -1.4
1,659,907 - -0.9
1,660,143 - -1.3
1,660,261 - Dsui_1582 0.23 -2.9
1,660,261 - Dsui_1582 0.23 -0.9
1,660,300 - Dsui_1582 0.29 +0.7
1,660,312 + Dsui_1582 0.30 -0.2
1,660,339 - Dsui_1582 0.34 +0.7
1,660,358 - Dsui_1582 0.37 +0.7
1,660,371 + Dsui_1582 0.38 -0.0
1,660,379 - Dsui_1582 0.40 +0.7
1,660,421 - Dsui_1582 0.45 -0.3
1,660,421 - Dsui_1582 0.45 +0.7
1,660,428 + Dsui_1582 0.46 +0.6
1,660,450 + Dsui_1582 0.49 +0.2
1,660,511 - Dsui_1582 0.58 +0.7
1,660,592 + Dsui_1582 0.69 +0.1
1,660,615 - Dsui_1582 0.72 +0.7
1,660,650 - Dsui_1582 0.77 +0.7
1,660,791 - +0.7
1,660,835 + -0.3
1,660,905 + +0.2
1,660,937 + +0.0
1,660,945 - -0.3
1,660,963 - +0.7
1,661,101 - Dsui_1583 0.15 -0.9
1,661,120 + Dsui_1583 0.17 +0.3
1,661,184 + Dsui_1583 0.21 +0.2
1,661,187 - Dsui_1583 0.21 -1.2
1,661,192 - Dsui_1583 0.22 +0.7
1,661,216 + Dsui_1583 0.23 -0.5
1,661,224 - Dsui_1583 0.24 -2.9
1,661,224 - Dsui_1583 0.24 -0.3
1,661,385 + Dsui_1583 0.35 +0.1
1,661,393 - Dsui_1583 0.36 -0.3
1,661,406 + Dsui_1583 0.37 +0.1
1,661,470 - +0.7
1,661,708 - Dsui_1583 0.58 -0.9
1,661,851 + Dsui_1583 0.68 +0.1
1,661,911 + Dsui_1583 0.73 -0.0
1,661,913 - Dsui_1583 0.73 -2.7
1,661,919 - +0.7
1,661,945 + Dsui_1583 0.75 -0.2
1,661,953 - Dsui_1583 0.76 +0.7
1,662,015 + Dsui_1583 0.80 -0.1
1,662,205 - -2.3
1,662,231 + +0.1
1,662,250 + +0.0
1,662,275 - +0.7
1,662,296 + +0.5
1,662,304 - -0.3
1,662,489 + Dsui_1584 0.27 +0.2
1,662,797 + Dsui_1584 0.74 -0.0
1,662,820 + Dsui_1584 0.78 -0.2

Or see this region's nucleotide sequence