Strain Fitness in Dechlorosoma suillum PS around Dsui_1496

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1494 and Dsui_1495 are separated by 78 nucleotidesDsui_1495 and Dsui_1496 are separated by 22 nucleotidesDsui_1496 and Dsui_1497 are separated by 102 nucleotides Dsui_1494: Dsui_1494 - ATP-dependent metalloprotease FtsH, at 1,557,905 to 1,559,734 _1494 Dsui_1495: Dsui_1495 - molecular chaperone (small heat shock protein), at 1,559,813 to 1,560,271 _1495 Dsui_1496: Dsui_1496 - YfdX protein, at 1,560,294 to 1,561,208 _1496 Dsui_1497: Dsui_1497 - YfdX protein, at 1,561,311 to 1,562,198 _1497 Position (kb) 1560 1561 1562Strain fitness (log2 ratio) -2 -1 0 1 2at 1559.543 kb on + strand, within Dsui_1494at 1559.743 kb on + strandat 1559.748 kb on + strandat 1559.769 kb on - strandat 1559.994 kb on + strand, within Dsui_1495at 1560.170 kb on - strand, within Dsui_1495at 1560.220 kb on + strand, within Dsui_1495at 1560.228 kb on - strandat 1560.228 kb on - strandat 1560.292 kb on - strandat 1560.306 kb on - strandat 1560.308 kb on + strandat 1560.326 kb on - strandat 1560.366 kb on + strandat 1560.366 kb on + strandat 1560.374 kb on - strandat 1560.374 kb on - strandat 1560.374 kb on - strandat 1560.420 kb on - strand, within Dsui_1496at 1560.557 kb on + strand, within Dsui_1496at 1560.657 kb on - strand, within Dsui_1496at 1560.657 kb on - strand, within Dsui_1496at 1560.691 kb on - strand, within Dsui_1496at 1560.728 kb on + strand, within Dsui_1496at 1560.889 kb on - strand, within Dsui_1496at 1560.911 kb on + strand, within Dsui_1496at 1560.915 kb on - strand, within Dsui_1496at 1561.020 kb on + strand, within Dsui_1496at 1561.022 kb on + strand, within Dsui_1496at 1561.022 kb on + strand, within Dsui_1496at 1561.022 kb on + strand, within Dsui_1496at 1561.030 kb on - strand, within Dsui_1496at 1561.061 kb on - strand, within Dsui_1496at 1561.070 kb on + strand, within Dsui_1496at 1561.078 kb on - strand, within Dsui_1496at 1561.078 kb on - strand, within Dsui_1496at 1561.091 kb on + strand, within Dsui_1496at 1561.126 kb on - strandat 1561.168 kb on + strandat 1561.241 kb on + strandat 1561.390 kb on + strandat 1561.402 kb on + strand, within Dsui_1497at 1561.403 kb on + strand, within Dsui_1497at 1561.405 kb on - strand, within Dsui_1497at 1561.410 kb on - strand, within Dsui_1497at 1561.411 kb on - strand, within Dsui_1497at 1561.429 kb on - strand, within Dsui_1497at 1561.556 kb on + strand, within Dsui_1497at 1561.562 kb on + strand, within Dsui_1497at 1561.596 kb on - strand, within Dsui_1497at 1561.618 kb on + strand, within Dsui_1497at 1561.633 kb on + strand, within Dsui_1497at 1561.656 kb on - strand, within Dsui_1497at 1561.722 kb on - strand, within Dsui_1497at 1561.855 kb on + strand, within Dsui_1497at 1562.030 kb on - strand, within Dsui_1497at 1562.053 kb on + strand, within Dsui_1497at 1562.069 kb on - strand, within Dsui_1497at 1562.096 kb on + strand, within Dsui_1497at 1562.109 kb on - strand, within Dsui_1497at 1562.173 kb on + strandat 1562.201 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,559,543 + Dsui_1494 0.90 -0.0
1,559,743 + +0.7
1,559,748 + -2.7
1,559,769 - +0.7
1,559,994 + Dsui_1495 0.39 -0.3
1,560,170 - Dsui_1495 0.78 +0.7
1,560,220 + Dsui_1495 0.89 +0.7
1,560,228 - +0.7
1,560,228 - +0.7
1,560,292 - -0.9
1,560,306 - -0.3
1,560,308 + -0.3
1,560,326 - -1.3
1,560,366 + +0.7
1,560,366 + -0.9
1,560,374 - -0.3
1,560,374 - -0.9
1,560,374 - +0.7
1,560,420 - Dsui_1496 0.14 -0.3
1,560,557 + Dsui_1496 0.29 -0.3
1,560,657 - Dsui_1496 0.40 -0.3
1,560,657 - Dsui_1496 0.40 -0.3
1,560,691 - Dsui_1496 0.43 +0.7
1,560,728 + Dsui_1496 0.47 +0.7
1,560,889 - Dsui_1496 0.65 -1.6
1,560,911 + Dsui_1496 0.67 +2.0
1,560,915 - Dsui_1496 0.68 -0.8
1,561,020 + Dsui_1496 0.79 +0.1
1,561,022 + Dsui_1496 0.80 +0.2
1,561,022 + Dsui_1496 0.80 -0.5
1,561,022 + Dsui_1496 0.80 -0.8
1,561,030 - Dsui_1496 0.80 +0.7
1,561,061 - Dsui_1496 0.84 +0.7
1,561,070 + Dsui_1496 0.85 +2.7
1,561,078 - Dsui_1496 0.86 -0.8
1,561,078 - Dsui_1496 0.86 -0.3
1,561,091 + Dsui_1496 0.87 -0.8
1,561,126 - -0.8
1,561,168 + -1.6
1,561,241 + -2.4
1,561,390 + +0.2
1,561,402 + Dsui_1497 0.10 +1.0
1,561,403 + Dsui_1497 0.10 -0.2
1,561,405 - Dsui_1497 0.11 +0.7
1,561,410 - Dsui_1497 0.11 -0.8
1,561,411 - Dsui_1497 0.11 -1.3
1,561,429 - Dsui_1497 0.13 -1.3
1,561,556 + Dsui_1497 0.28 -0.8
1,561,562 + Dsui_1497 0.28 -0.7
1,561,596 - Dsui_1497 0.32 +0.7
1,561,618 + Dsui_1497 0.35 +0.2
1,561,633 + Dsui_1497 0.36 -0.0
1,561,656 - Dsui_1497 0.39 +0.7
1,561,722 - Dsui_1497 0.46 -1.3
1,561,855 + Dsui_1497 0.61 -0.1
1,562,030 - Dsui_1497 0.81 -1.6
1,562,053 + Dsui_1497 0.84 -0.8
1,562,069 - Dsui_1497 0.85 -1.3
1,562,096 + Dsui_1497 0.88 -1.5
1,562,109 - Dsui_1497 0.90 +0.7
1,562,173 + -0.8
1,562,201 + -1.4

Or see this region's nucleotide sequence