Strain Fitness in Dechlorosoma suillum PS around Dsui_1436

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1434 and Dsui_1435 overlap by 1 nucleotidesDsui_1435 and Dsui_1436 are separated by 12 nucleotidesDsui_1436 and Dsui_1437 are separated by 18 nucleotides Dsui_1434: Dsui_1434 - methylase of chemotaxis methyl-accepting protein, at 1,487,835 to 1,488,647 _1434 Dsui_1435: Dsui_1435 - chemotaxis signal transduction protein, at 1,488,647 to 1,489,204 _1435 Dsui_1436: Dsui_1436 - methyl-accepting chemotaxis protein, at 1,489,217 to 1,490,839 _1436 Dsui_1437: Dsui_1437 - chemotaxis protein histidine kinase-like protein, at 1,490,858 to 1,493,092 _1437 Position (kb) 1489 1490 1491Strain fitness (log2 ratio) -2 -1 0 1at 1488.286 kb on + strand, within Dsui_1434at 1488.286 kb on + strand, within Dsui_1434at 1488.673 kb on - strandat 1488.724 kb on + strand, within Dsui_1435at 1488.863 kb on + strand, within Dsui_1435at 1488.863 kb on + strand, within Dsui_1435at 1488.871 kb on - strand, within Dsui_1435at 1488.909 kb on + strand, within Dsui_1435at 1489.127 kb on + strand, within Dsui_1435at 1489.205 kb on + strandat 1489.317 kb on + strandat 1489.441 kb on + strand, within Dsui_1436at 1489.481 kb on - strand, within Dsui_1436at 1489.509 kb on - strand, within Dsui_1436at 1489.509 kb on - strand, within Dsui_1436at 1489.658 kb on - strand, within Dsui_1436at 1489.917 kb on + strand, within Dsui_1436at 1489.924 kb on + strand, within Dsui_1436at 1489.924 kb on + strand, within Dsui_1436at 1489.953 kb on + strand, within Dsui_1436at 1490.027 kb on - strand, within Dsui_1436at 1490.067 kb on + strand, within Dsui_1436at 1490.193 kb on - strand, within Dsui_1436at 1490.366 kb on - strand, within Dsui_1436at 1490.513 kb on - strand, within Dsui_1436at 1490.520 kb on + strand, within Dsui_1436at 1490.686 kb on - strandat 1490.687 kb on - strandat 1490.687 kb on - strandat 1490.922 kb on - strandat 1490.973 kb on + strandat 1491.012 kb on + strandat 1491.053 kb on - strandat 1491.306 kb on - strand, within Dsui_1437at 1491.397 kb on + strand, within Dsui_1437at 1491.402 kb on - strand, within Dsui_1437at 1491.446 kb on + strand, within Dsui_1437at 1491.454 kb on + strand, within Dsui_1437at 1491.533 kb on - strand, within Dsui_1437at 1491.536 kb on + strand, within Dsui_1437at 1491.557 kb on - strand, within Dsui_1437at 1491.561 kb on + strand, within Dsui_1437at 1491.708 kb on - strand, within Dsui_1437

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,488,286 + Dsui_1434 0.55 +0.7
1,488,286 + Dsui_1434 0.55 -1.3
1,488,673 - -0.4
1,488,724 + Dsui_1435 0.14 -0.9
1,488,863 + Dsui_1435 0.39 -0.9
1,488,863 + Dsui_1435 0.39 -1.3
1,488,871 - Dsui_1435 0.40 -0.3
1,488,909 + Dsui_1435 0.47 -0.3
1,489,127 + Dsui_1435 0.86 +0.7
1,489,205 + -1.3
1,489,317 + -1.3
1,489,441 + Dsui_1436 0.14 -0.9
1,489,481 - Dsui_1436 0.16 -0.1
1,489,509 - Dsui_1436 0.18 -0.1
1,489,509 - Dsui_1436 0.18 +0.6
1,489,658 - Dsui_1436 0.27 -0.3
1,489,917 + Dsui_1436 0.43 +0.7
1,489,924 + Dsui_1436 0.44 +0.7
1,489,924 + Dsui_1436 0.44 +0.1
1,489,953 + Dsui_1436 0.45 +1.0
1,490,027 - Dsui_1436 0.50 -0.1
1,490,067 + Dsui_1436 0.52 -1.6
1,490,193 - Dsui_1436 0.60 -0.1
1,490,366 - Dsui_1436 0.71 +0.3
1,490,513 - Dsui_1436 0.80 +0.3
1,490,520 + Dsui_1436 0.80 +0.7
1,490,686 - +0.0
1,490,687 - -0.2
1,490,687 - -0.2
1,490,922 - -0.2
1,490,973 + -1.3
1,491,012 + -2.1
1,491,053 - -0.1
1,491,306 - Dsui_1437 0.20 -0.2
1,491,397 + Dsui_1437 0.24 -1.3
1,491,402 - Dsui_1437 0.24 -0.2
1,491,446 + Dsui_1437 0.26 -0.9
1,491,454 + Dsui_1437 0.27 -1.6
1,491,533 - Dsui_1437 0.30 -0.3
1,491,536 + Dsui_1437 0.30 -1.6
1,491,557 - Dsui_1437 0.31 -0.1
1,491,561 + Dsui_1437 0.31 -1.6
1,491,708 - Dsui_1437 0.38 -0.2

Or see this region's nucleotide sequence