Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1378 and Dsui_1379 are separated by 6 nucleotides Dsui_1379 and Dsui_1380 are separated by 1 nucleotides Dsui_1380 and Dsui_1381 overlap by 4 nucleotides
Dsui_1378: Dsui_1378 - enoyl-CoA hydratase/carnithine racemase, at 1,434,564 to 1,435,340
_1378
Dsui_1379: Dsui_1379 - lipopolysaccharide transport periplasmic protein LptA, at 1,435,347 to 1,435,955
_1379
Dsui_1380: Dsui_1380 - hypothetical protein, at 1,435,957 to 1,436,547
_1380
Dsui_1381: Dsui_1381 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family, at 1,436,544 to 1,437,056
_1381
Position (kb)
1435
1436 Strain fitness (log2 ratio)
-2
-1
0
1 at 1434.572 kb on + strand at 1434.583 kb on + strand at 1434.673 kb on + strand, within Dsui_1378 at 1434.674 kb on - strand, within Dsui_1378 at 1434.796 kb on + strand, within Dsui_1378 at 1434.864 kb on - strand, within Dsui_1378 at 1434.874 kb on + strand, within Dsui_1378 at 1434.874 kb on + strand, within Dsui_1378 at 1434.874 kb on + strand, within Dsui_1378 at 1434.882 kb on - strand, within Dsui_1378 at 1434.883 kb on - strand, within Dsui_1378 at 1434.936 kb on - strand, within Dsui_1378 at 1434.961 kb on - strand, within Dsui_1378 at 1435.030 kb on - strand, within Dsui_1378 at 1435.099 kb on + strand, within Dsui_1378 at 1435.127 kb on - strand, within Dsui_1378 at 1435.305 kb on + strand at 1435.305 kb on + strand at 1435.311 kb on + strand at 1435.344 kb on + strand at 1435.344 kb on + strand at 1435.352 kb on - strand at 1435.352 kb on - strand at 1435.352 kb on - strand at 1435.352 kb on - strand at 1435.352 kb on - strand at 1435.375 kb on - strand at 1435.379 kb on + strand at 1435.379 kb on + strand at 1435.387 kb on - strand at 1435.963 kb on - strand at 1436.676 kb on - strand, within Dsui_1381 at 1436.829 kb on - strand, within Dsui_1381
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 1,434,572 + -1.7 1,434,583 + -0.3 1,434,673 + Dsui_1378 0.14 +0.7 1,434,674 - Dsui_1378 0.14 -0.4 1,434,796 + Dsui_1378 0.30 +0.7 1,434,864 - Dsui_1378 0.39 -0.4 1,434,874 + Dsui_1378 0.40 -0.3 1,434,874 + Dsui_1378 0.40 +0.7 1,434,874 + Dsui_1378 0.40 -1.3 1,434,882 - Dsui_1378 0.41 -0.4 1,434,883 - Dsui_1378 0.41 -0.1 1,434,936 - Dsui_1378 0.48 -0.3 1,434,961 - Dsui_1378 0.51 -0.0 1,435,030 - Dsui_1378 0.60 +0.2 1,435,099 + Dsui_1378 0.69 -1.7 1,435,127 - Dsui_1378 0.72 -0.1 1,435,305 + +0.7 1,435,305 + +0.7 1,435,311 + -1.3 1,435,344 + -0.9 1,435,344 + -2.1 1,435,352 - -0.2 1,435,352 - -0.2 1,435,352 - -0.5 1,435,352 - -0.2 1,435,352 - -0.4 1,435,375 - -0.4 1,435,379 + +0.7 1,435,379 + +0.1 1,435,387 - -0.3 1,435,963 - +0.3 1,436,676 - Dsui_1381 0.26 -1.5 1,436,829 - Dsui_1381 0.56 -2.2
Or see this region's nucleotide sequence