Strain Fitness in Dechlorosoma suillum PS around Dsui_0988

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0987 and Dsui_0988 are separated by 91 nucleotidesDsui_0988 and Dsui_0989 overlap by 4 nucleotides Dsui_0987: Dsui_0987 - Zn-dependent hydrolase, glyoxylase, at 1,014,671 to 1,015,606 _0987 Dsui_0988: Dsui_0988 - hypothetical protein, at 1,015,698 to 1,016,546 _0988 Dsui_0989: Dsui_0989 - amidohydrolase, at 1,016,543 to 1,017,706 _0989 Position (kb) 1015 1016 1017Strain fitness (log2 ratio) -3 -2 -1 0 1at 1014.717 kb on - strandat 1014.801 kb on - strandat 1014.818 kb on + strand, within Dsui_0987at 1014.818 kb on + strand, within Dsui_0987at 1014.826 kb on - strand, within Dsui_0987at 1014.845 kb on + strand, within Dsui_0987at 1014.984 kb on + strand, within Dsui_0987at 1015.049 kb on + strand, within Dsui_0987at 1015.113 kb on + strand, within Dsui_0987at 1015.205 kb on - strandat 1015.247 kb on - strand, within Dsui_0987at 1015.379 kb on + strand, within Dsui_0987at 1015.384 kb on + strand, within Dsui_0987at 1015.401 kb on + strand, within Dsui_0987at 1015.545 kb on + strandat 1015.585 kb on + strandat 1015.701 kb on + strandat 1015.708 kb on + strandat 1015.708 kb on + strandat 1015.708 kb on + strandat 1015.764 kb on + strandat 1015.764 kb on + strandat 1015.772 kb on - strandat 1015.772 kb on - strandat 1015.833 kb on - strand, within Dsui_0988at 1015.833 kb on - strand, within Dsui_0988at 1015.841 kb on + strand, within Dsui_0988at 1015.970 kb on + strand, within Dsui_0988at 1015.980 kb on + strand, within Dsui_0988at 1016.006 kb on - strand, within Dsui_0988at 1016.115 kb on + strand, within Dsui_0988at 1016.115 kb on + strand, within Dsui_0988at 1016.169 kb on - strand, within Dsui_0988at 1016.216 kb on + strand, within Dsui_0988at 1016.285 kb on - strand, within Dsui_0988at 1016.466 kb on + strandat 1016.474 kb on - strandat 1016.479 kb on + strandat 1016.487 kb on - strandat 1016.513 kb on + strandat 1016.541 kb on + strandat 1016.646 kb on - strandat 1016.753 kb on - strand, within Dsui_0989at 1016.762 kb on + strand, within Dsui_0989at 1016.836 kb on + strand, within Dsui_0989at 1016.836 kb on + strand, within Dsui_0989at 1016.951 kb on + strand, within Dsui_0989at 1016.956 kb on + strand, within Dsui_0989at 1016.956 kb on + strand, within Dsui_0989at 1016.994 kb on + strandat 1017.002 kb on - strand, within Dsui_0989at 1017.009 kb on + strand, within Dsui_0989at 1017.034 kb on + strand, within Dsui_0989at 1017.064 kb on - strand, within Dsui_0989at 1017.066 kb on + strand, within Dsui_0989at 1017.233 kb on + strand, within Dsui_0989at 1017.331 kb on + strand, within Dsui_0989at 1017.332 kb on - strand, within Dsui_0989

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,014,717 - -3.0
1,014,801 - +0.8
1,014,818 + Dsui_0987 0.16 -0.0
1,014,818 + Dsui_0987 0.16 -0.3
1,014,826 - Dsui_0987 0.17 -0.2
1,014,845 + Dsui_0987 0.19 +0.1
1,014,984 + Dsui_0987 0.33 -0.2
1,015,049 + Dsui_0987 0.40 -0.2
1,015,113 + Dsui_0987 0.47 -0.6
1,015,205 - -0.2
1,015,247 - Dsui_0987 0.62 -2.2
1,015,379 + Dsui_0987 0.76 -0.1
1,015,384 + Dsui_0987 0.76 -0.7
1,015,401 + Dsui_0987 0.78 -0.3
1,015,545 + -0.2
1,015,585 + +0.1
1,015,701 + -1.2
1,015,708 + -0.6
1,015,708 + -0.1
1,015,708 + -0.4
1,015,764 + +0.0
1,015,764 + -0.6
1,015,772 - -0.2
1,015,772 - -1.7
1,015,833 - Dsui_0988 0.16 -0.7
1,015,833 - Dsui_0988 0.16 +0.8
1,015,841 + Dsui_0988 0.17 -0.4
1,015,970 + Dsui_0988 0.32 +0.7
1,015,980 + Dsui_0988 0.33 +1.4
1,016,006 - Dsui_0988 0.36 -0.9
1,016,115 + Dsui_0988 0.49 +0.0
1,016,115 + Dsui_0988 0.49 -0.2
1,016,169 - Dsui_0988 0.55 +0.8
1,016,216 + Dsui_0988 0.61 +0.4
1,016,285 - Dsui_0988 0.69 -0.9
1,016,466 + +0.8
1,016,474 - -0.8
1,016,479 + -1.0
1,016,487 - -0.5
1,016,513 + -0.2
1,016,541 + -1.4
1,016,646 - -0.1
1,016,753 - Dsui_0989 0.18 -0.3
1,016,762 + Dsui_0989 0.19 +0.8
1,016,836 + Dsui_0989 0.25 -1.0
1,016,836 + Dsui_0989 0.25 +1.1
1,016,951 + Dsui_0989 0.35 +0.3
1,016,956 + Dsui_0989 0.35 +0.8
1,016,956 + Dsui_0989 0.35 -0.5
1,016,994 + +0.8
1,017,002 - Dsui_0989 0.39 -0.1
1,017,009 + Dsui_0989 0.40 -0.1
1,017,034 + Dsui_0989 0.42 -3.0
1,017,064 - Dsui_0989 0.45 -0.1
1,017,066 + Dsui_0989 0.45 -0.7
1,017,233 + Dsui_0989 0.59 -0.2
1,017,331 + Dsui_0989 0.68 -0.2
1,017,332 - Dsui_0989 0.68 -0.2

Or see this region's nucleotide sequence