Strain Fitness in Dechlorosoma suillum PS around Dsui_0532

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0530 and Dsui_0531 overlap by 4 nucleotidesDsui_0531 and Dsui_0532 are separated by 58 nucleotidesDsui_0532 and Dsui_0533 are separated by 116 nucleotides Dsui_0530: Dsui_0530 - ABC-type Fe3+-siderophore transport system, permease component, at 535,960 to 536,940 _0530 Dsui_0531: Dsui_0531 - ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component, at 536,937 to 537,707 _0531 Dsui_0532: Dsui_0532 - cob(I)alamin adenosyltransferase, at 537,766 to 538,368 _0532 Dsui_0533: Dsui_0533 - cobyrinic acid a,c-diamide synthase, at 538,485 to 539,792 _0533 Position (kb) 537 538 539Strain fitness (log2 ratio) -2 -1 0 1at 536.902 kb on + strandat 536.917 kb on + strandat 536.943 kb on + strandat 536.952 kb on - strandat 536.998 kb on - strandat 537.024 kb on + strand, within Dsui_0531at 537.064 kb on + strand, within Dsui_0531at 537.136 kb on + strand, within Dsui_0531at 537.186 kb on + strand, within Dsui_0531at 537.291 kb on + strand, within Dsui_0531at 537.296 kb on + strand, within Dsui_0531at 537.299 kb on - strand, within Dsui_0531at 537.304 kb on - strandat 537.321 kb on + strand, within Dsui_0531at 537.472 kb on + strand, within Dsui_0531at 537.645 kb on + strandat 537.677 kb on - strandat 537.682 kb on - strandat 537.836 kb on - strandat 537.899 kb on - strand, within Dsui_0532at 537.899 kb on - strand, within Dsui_0532at 537.937 kb on - strand, within Dsui_0532at 538.014 kb on + strand, within Dsui_0532at 538.053 kb on - strand, within Dsui_0532at 538.132 kb on - strand, within Dsui_0532at 538.172 kb on - strand, within Dsui_0532at 538.212 kb on - strand, within Dsui_0532at 538.325 kb on + strandat 538.538 kb on + strandat 538.565 kb on + strandat 538.779 kb on + strand, within Dsui_0533at 538.843 kb on + strand, within Dsui_0533at 538.876 kb on + strand, within Dsui_0533at 538.902 kb on - strandat 538.986 kb on - strandat 539.061 kb on + strand, within Dsui_0533

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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536,902 + -0.3
536,917 + -0.2
536,943 + -0.4
536,952 - +0.7
536,998 - -0.3
537,024 + Dsui_0531 0.11 -0.4
537,064 + Dsui_0531 0.16 -0.8
537,136 + Dsui_0531 0.26 -0.4
537,186 + Dsui_0531 0.32 -0.4
537,291 + Dsui_0531 0.46 -0.5
537,296 + Dsui_0531 0.47 -0.5
537,299 - Dsui_0531 0.47 -0.3
537,304 - +0.7
537,321 + Dsui_0531 0.50 -0.6
537,472 + Dsui_0531 0.69 -0.2
537,645 + -0.0
537,677 - -2.1
537,682 - -1.3
537,836 - +0.7
537,899 - Dsui_0532 0.22 -1.6
537,899 - Dsui_0532 0.22 -1.6
537,937 - Dsui_0532 0.28 +0.7
538,014 + Dsui_0532 0.41 -0.3
538,053 - Dsui_0532 0.48 -1.9
538,132 - Dsui_0532 0.61 -2.6
538,172 - Dsui_0532 0.67 +0.7
538,212 - Dsui_0532 0.74 +0.7
538,325 + -0.3
538,538 + -0.9
538,565 + +0.7
538,779 + Dsui_0533 0.22 -0.9
538,843 + Dsui_0533 0.27 -0.9
538,876 + Dsui_0533 0.30 -0.9
538,902 - -0.9
538,986 - +0.7
539,061 + Dsui_0533 0.44 -1.6

Or see this region's nucleotide sequence