Experiment: PYE 0.5x 25C survival rep3 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03780 and CCNA_03781 are separated by 170 nucleotides CCNA_03781 and CCNA_03782 are separated by 183 nucleotides CCNA_03782 and CCNA_03783 overlap by 4 nucleotides
CCNA_03780: CCNA_03780 - conserved hypothetical secreted protein, at 3,946,415 to 3,947,149
_03780
CCNA_03781: CCNA_03781 - aconitate hydratase, at 3,947,320 to 3,950,007
_03781
CCNA_03782: CCNA_03782 - cytochrome c biogenesis ATP-binding export protein CcmA, at 3,950,191 to 3,950,805
_03782
CCNA_03783: CCNA_03783 - cytochrome c biogenesis ABC transporter permease component CcmB, at 3,950,802 to 3,951,467
_03783
Position (kb)
3947
3948
3949
3950
3951 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3946.338 kb on - strand at 3946.346 kb on - strand at 3946.368 kb on + strand at 3946.372 kb on + strand at 3946.375 kb on + strand at 3946.383 kb on - strand at 3946.390 kb on + strand at 3946.398 kb on - strand at 3946.434 kb on + strand at 3947.139 kb on + strand at 3947.147 kb on - strand at 3947.301 kb on - strand at 3947.327 kb on + strand at 3947.335 kb on - strand at 3947.335 kb on - strand at 3947.335 kb on - strand at 3950.024 kb on - strand at 3950.034 kb on - strand at 3950.034 kb on - strand at 3950.111 kb on - strand at 3950.181 kb on + strand at 3950.500 kb on + strand, within CCNA_03782 at 3950.500 kb on + strand, within CCNA_03782 at 3950.570 kb on + strand, within CCNA_03782 at 3950.586 kb on + strand, within CCNA_03782 at 3950.614 kb on + strand, within CCNA_03782 at 3950.617 kb on - strand, within CCNA_03782 at 3950.636 kb on + strand, within CCNA_03782 at 3950.636 kb on + strand, within CCNA_03782 at 3950.686 kb on + strand, within CCNA_03782 at 3950.698 kb on + strand, within CCNA_03782 at 3950.736 kb on + strand, within CCNA_03782 at 3950.786 kb on + strand at 3950.794 kb on - strand at 3950.838 kb on + strand at 3950.906 kb on - strand, within CCNA_03783 at 3950.911 kb on - strand, within CCNA_03783 at 3950.931 kb on + strand, within CCNA_03783 at 3950.939 kb on - strand, within CCNA_03783 at 3950.973 kb on + strand, within CCNA_03783 at 3950.976 kb on - strand, within CCNA_03783
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 25C survival rep3 12 days remove 3,946,338 - +0.4 3,946,346 - -0.0 3,946,368 + -0.6 3,946,372 + -1.2 3,946,375 + -0.9 3,946,383 - +0.5 3,946,390 + -0.5 3,946,398 - +0.5 3,946,434 + -2.7 3,947,139 + -1.3 3,947,147 - -5.1 3,947,301 - +0.3 3,947,327 + -2.0 3,947,335 - +0.2 3,947,335 - +0.1 3,947,335 - +0.4 3,950,024 - -0.8 3,950,034 - +0.1 3,950,034 - -1.5 3,950,111 - -0.5 3,950,181 + -1.5 3,950,500 + CCNA_03782 0.50 +1.0 3,950,500 + CCNA_03782 0.50 -0.0 3,950,570 + CCNA_03782 0.62 -1.0 3,950,586 + CCNA_03782 0.64 -0.6 3,950,614 + CCNA_03782 0.69 -0.3 3,950,617 - CCNA_03782 0.69 +1.0 3,950,636 + CCNA_03782 0.72 -1.3 3,950,636 + CCNA_03782 0.72 -0.6 3,950,686 + CCNA_03782 0.80 -0.0 3,950,698 + CCNA_03782 0.82 +1.0 3,950,736 + CCNA_03782 0.89 -0.0 3,950,786 + +1.0 3,950,794 - +2.0 3,950,838 + -1.8 3,950,906 - CCNA_03783 0.16 -0.3 3,950,911 - CCNA_03783 0.16 -0.8 3,950,931 + CCNA_03783 0.19 +2.0 3,950,939 - CCNA_03783 0.21 +1.0 3,950,973 + CCNA_03783 0.26 -0.8 3,950,976 - CCNA_03783 0.26 +2.0
Or see this region's nucleotide sequence