Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03680

Experiment: PYE 0.5x 25C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 25C survival rep3 12 days
3,838,216	+		CCNA_03678	0.46	+1.0
3,838,224	-		CCNA_03678	0.47	-2.4
3,838,260	-		CCNA_03678	0.53	-0.3
3,838,276	+		CCNA_03678	0.56	-1.4
3,838,308	-		CCNA_03678	0.61	-1.5
3,838,331	+		CCNA_03678	0.64	-1.5
3,838,345	-		CCNA_03678	0.67	-0.7
3,838,384	+		CCNA_03678	0.73	+1.0
3,838,384	+		CCNA_03678	0.73	+1.6
3,838,392	-		CCNA_03678	0.74	+0.6
3,838,402	-		CCNA_03678	0.76	-1.0
3,838,423	-		CCNA_03678	0.79	-1.8
3,838,425	-		CCNA_03678	0.79	+0.1
3,838,430	-		CCNA_03678	0.80	+0.7
3,838,430	-		CCNA_03678	0.80	-0.8
3,838,483	+		CCNA_03678	0.89	-0.6
3,838,483	+		CCNA_03678	0.89	-1.5
3,838,509	-				-1.9
3,838,554	-				-1.4
3,838,632	+				+0.4
3,838,664	+				-0.1
3,838,685	-				-1.1
3,838,741	-				+1.6
3,838,746	-				-1.4
3,838,796	+		CCNA_03679	0.14	+0.1
3,838,796	+		CCNA_03679	0.14	-0.0
3,838,804	-		CCNA_03679	0.16	-0.7
3,838,813	+		CCNA_03679	0.18	-0.7
3,838,824	-		CCNA_03679	0.21	-0.4
3,838,830	+		CCNA_03679	0.22	+0.4
3,838,830	+		CCNA_03679	0.22	+0.2
3,838,830	+		CCNA_03679	0.22	-0.1
3,838,838	-		CCNA_03679	0.24	-0.0
3,838,838	-		CCNA_03679	0.24	-0.2
3,838,838	-		CCNA_03679	0.24	+1.1
3,838,838	-		CCNA_03679	0.24	-0.4
3,838,838	-		CCNA_03679	0.24	+0.5
3,838,848	-		CCNA_03679	0.26	+0.2
3,838,851	+		CCNA_03679	0.27	-0.5
3,838,851	+		CCNA_03679	0.27	-0.3
3,838,858	-		CCNA_03679	0.28	-0.5
3,838,859	-		CCNA_03679	0.29	+0.1
3,838,859	-		CCNA_03679	0.29	-0.4
3,838,865	-		CCNA_03679	0.30	-0.1
3,838,867	+		CCNA_03679	0.31	-0.6
3,838,875	-		CCNA_03679	0.32	-0.4
3,838,907	-		CCNA_03679	0.40	-0.4
3,838,954	-		CCNA_03679	0.51	+0.3
3,838,959	-		CCNA_03679	0.52	+0.1
3,839,039	-		CCNA_03679	0.71	+0.4
3,839,041	-		CCNA_03679	0.71	+0.8
3,839,080	+		CCNA_03679	0.80	-0.4
3,839,152	-				+0.7
3,839,200	+				-5.3
3,839,200	+				-1.8
3,839,210	+				-1.7
3,839,218	-				-5.4
3,839,236	+				-1.9
3,839,244	-				-3.8
3,839,244	-				-6.6
3,839,267	-				-5.8
3,839,269	+				-3.0
3,839,269	+				-3.5
3,839,274	+				-3.4
3,839,345	+				-5.1
3,839,353	-				-3.3
3,839,353	-				-4.8
3,839,353	-				-7.0
3,839,367	-				-4.6
3,839,400	-				-6.4
3,839,407	-				-3.2
3,839,450	+				+0.4
3,839,480	+				-0.4
3,839,503	-				-5.4
3,839,521	-		CCNA_03680	0.10	-4.1
3,839,606	+		CCNA_03680	0.12	-4.0
3,839,614	-		CCNA_03680	0.13	-6.1
3,839,616	-		CCNA_03680	0.13	-5.8
3,839,638	-		CCNA_03680	0.13	-5.6
3,839,666	+		CCNA_03680	0.14	-5.8
3,839,666	+		CCNA_03680	0.14	-2.0
3,839,668	-		CCNA_03680	0.14	-4.4
3,839,683	+		CCNA_03680	0.15	-3.4
3,839,714	+		CCNA_03680	0.15	-3.4
3,839,714	+		CCNA_03680	0.15	-2.3
3,839,725	+		CCNA_03680	0.16	-4.5
3,839,725	+		CCNA_03680	0.16	-3.8
3,839,733	-		CCNA_03680	0.16	-4.1
3,839,740	-		CCNA_03680	0.16	-2.9
3,839,783	+		CCNA_03680	0.17	-4.8
3,839,800	+		CCNA_03680	0.18	-2.6
3,839,826	+		CCNA_03680	0.19	-3.0
3,839,826	+		CCNA_03680	0.19	-2.4
3,839,826	+		CCNA_03680	0.19	-5.2
3,839,828	+		CCNA_03680	0.19	-6.0
3,839,828	+		CCNA_03680	0.19	-4.1
3,839,833	+		CCNA_03680	0.19	-3.4
3,839,834	-		CCNA_03680	0.19	-4.3
3,839,855	+		CCNA_03680	0.19	-3.2
3,839,863	-		CCNA_03680	0.20	-4.3
3,839,883	+		CCNA_03680	0.20	-3.2
3,839,888	+		CCNA_03680	0.20	-2.6
3,839,893	+		CCNA_03680	0.20	-4.3
3,839,896	-		CCNA_03680	0.20	-5.6
3,839,901	-		CCNA_03680	0.21	-6.0
3,839,917	-		CCNA_03680	0.21	-5.0
3,839,924	+		CCNA_03680	0.21	-4.5
3,839,924	+		CCNA_03680	0.21	-1.8
3,839,932	-		CCNA_03680	0.21	-7.0
3,839,994	+		CCNA_03680	0.23	-4.7
3,840,015	+		CCNA_03680	0.24	-2.8
3,840,023	-		CCNA_03680	0.24	-6.7
3,840,038	+		CCNA_03680	0.24	-3.6
3,840,038	+		CCNA_03680	0.24	-2.8
3,840,072	+		CCNA_03680	0.25	-3.5
3,840,075	+		CCNA_03680	0.25	-4.4
3,840,080	-		CCNA_03680	0.26	-4.4
3,840,083	-		CCNA_03680	0.26	-3.6
3,840,104	+		CCNA_03680	0.26	-2.1
3,840,112	-		CCNA_03680	0.27	-3.6
3,840,112	-		CCNA_03680	0.27	-6.5
3,840,122	+		CCNA_03680	0.27	-3.4
3,840,122	+		CCNA_03680	0.27	-3.4
3,840,149	-		CCNA_03680	0.28	-5.6
3,840,157	-		CCNA_03680	0.28	-5.5
3,840,174	-		CCNA_03680	0.28	-4.3
3,840,175	+		CCNA_03680	0.28	-2.3
3,840,209	+		CCNA_03680	0.29	-4.5
3,840,209	+		CCNA_03680	0.29	-1.8
3,840,209	+		CCNA_03680	0.29	-2.7
3,840,217	-		CCNA_03680	0.29	-4.8
3,840,217	-		CCNA_03680	0.29	-5.3
3,840,217	-		CCNA_03680	0.29	-4.5
3,840,217	-		CCNA_03680	0.29	-4.7
3,840,217	-		CCNA_03680	0.29	-4.4
3,840,217	-		CCNA_03680	0.29	-2.9
3,840,217	-		CCNA_03680	0.29	-4.0
3,840,218	-		CCNA_03680	0.29	-4.8
3,840,238	-		CCNA_03680	0.30	-1.5
3,840,238	-		CCNA_03680	0.30	-5.4
3,840,308	+		CCNA_03680	0.32	-4.7
3,840,315	-		CCNA_03680	0.32	-5.8
3,840,316	-		CCNA_03680	0.32	-5.2
3,840,327	-		CCNA_03680	0.32	-2.8
3,840,335	-		CCNA_03680	0.33	-5.8
3,840,335	-		CCNA_03680	0.33	-6.1
3,840,335	-		CCNA_03680	0.33	-4.2
3,840,336	-		CCNA_03680	0.33	-3.7
3,840,413	+		CCNA_03680	0.35	-2.9
3,840,421	-		CCNA_03680	0.35	-4.9
3,840,426	-		CCNA_03680	0.35	-4.3
3,840,457	-		CCNA_03680	0.36	-6.2
3,840,457	-		CCNA_03680	0.36	-5.5
3,840,524	+		CCNA_03680	0.38	-6.7
3,840,524	+		CCNA_03680	0.38	-3.2
3,840,528	+		CCNA_03680	0.38	-2.8
3,840,531	-		CCNA_03680	0.38	-6.0
3,840,532	-		CCNA_03680	0.38	-4.6
3,840,539	+		CCNA_03680	0.38	-4.7
3,840,542	-		CCNA_03680	0.38	+1.0
3,840,595	-		CCNA_03680	0.40	-5.1
3,840,621	+		CCNA_03680	0.41	-4.3
3,840,621	+		CCNA_03680	0.41	-5.7
3,840,715	-		CCNA_03680	0.43	-5.1
3,840,737	+		CCNA_03680	0.44	-1.0
3,840,737	+		CCNA_03680	0.44	-4.9
3,840,737	+		CCNA_03680	0.44	-2.4
3,840,737	+		CCNA_03680	0.44	-2.9
3,840,737	+		CCNA_03680	0.44	-5.2
3,840,737	+		CCNA_03680	0.44	-2.7
3,840,744	-		CCNA_03680	0.44	-5.6
3,840,745	-		CCNA_03680	0.44	-5.9
3,840,745	-		CCNA_03680	0.44	-4.4
3,840,745	-		CCNA_03680	0.44	-4.2
3,840,745	-		CCNA_03680	0.44	-5.8
3,840,776	-		CCNA_03680	0.45	-5.0
3,840,791	-		CCNA_03680	0.45	-5.2
3,840,831	-		CCNA_03680	0.47	-4.4
3,840,833	-		CCNA_03680	0.47	-6.0
3,840,833	-		CCNA_03680	0.47	-7.2
3,840,839	-		CCNA_03680	0.47	-4.4
3,840,852	-		CCNA_03680	0.47	-5.1
3,840,865	+		CCNA_03680	0.47	-2.9
3,840,873	-		CCNA_03680	0.48	-5.2
3,840,886	-		CCNA_03680	0.48	-5.8
3,840,886	-		CCNA_03680	0.48	-5.9
3,840,958	-		CCNA_03680	0.50	-4.7
3,840,986	+		CCNA_03680	0.51	-4.2
3,840,989	+		CCNA_03680	0.51	-5.6
3,840,999	-		CCNA_03680	0.51	-5.0
3,841,023	+		CCNA_03680	0.52	-2.2
3,841,033	+		CCNA_03680	0.52	-5.2
3,841,060	-		CCNA_03680	0.53	-5.7
3,841,065	+		CCNA_03680	0.53	-1.9
3,841,096	+		CCNA_03680	0.54	-1.2
3,841,103	+		CCNA_03680	0.54	-2.0
3,841,134	-		CCNA_03680	0.55	-6.2
3,841,143	-		CCNA_03680	0.55	-4.7
3,841,147	+		CCNA_03680	0.55	-3.7
3,841,154	-		CCNA_03680	0.56	-3.7
3,841,173	+		CCNA_03680	0.56	-5.3
3,841,186	+		CCNA_03680	0.56	-0.8
3,841,187	+		CCNA_03680	0.56	-2.5
3,841,195	-		CCNA_03680	0.57	-1.9
3,841,195	-		CCNA_03680	0.57	-4.8
3,841,195	-		CCNA_03680	0.57	-2.7
3,841,195	-		CCNA_03680	0.57	-1.9
3,841,207	-		CCNA_03680	0.57	-6.2
3,841,213	-		CCNA_03680	0.57	-4.7
3,841,239	+		CCNA_03680	0.58	-2.9
3,841,246	+		CCNA_03680	0.58	-2.6
3,841,246	+		CCNA_03680	0.58	-4.4
3,841,261	-		CCNA_03680	0.59	-5.7
3,841,282	+		CCNA_03680	0.59	-3.7
3,841,359	+		CCNA_03680	0.61	-2.6
3,841,377	+		CCNA_03680	0.62	-0.8
3,841,385	-		CCNA_03680	0.62	+1.0
3,841,454	+		CCNA_03680	0.64	-4.1
3,841,460	-		CCNA_03680	0.64	-6.7
3,841,483	+		CCNA_03680	0.65	-3.6
3,841,483	+		CCNA_03680	0.65	-1.5
3,841,483	+		CCNA_03680	0.65	-4.7
3,841,491	-		CCNA_03680	0.65	-5.0
3,841,493	+		CCNA_03680	0.65	-1.7
3,841,496	-		CCNA_03680	0.65	-7.1
3,841,503	+		CCNA_03680	0.65	-3.8
3,841,506	-		CCNA_03680	0.65	-7.2
3,841,511	-		CCNA_03680	0.65	-3.5
3,841,511	-		CCNA_03680	0.65	-3.3
3,841,511	-		CCNA_03680	0.65	-5.2
3,841,525	-		CCNA_03680	0.66	-3.6
3,841,530	-		CCNA_03680	0.66	-3.1
3,841,546	+		CCNA_03680	0.66	-2.9
3,841,554	-		CCNA_03680	0.67	-5.9
3,841,554	-		CCNA_03680	0.67	-4.6
3,841,554	-		CCNA_03680	0.67	-4.1
3,841,587	-		CCNA_03680	0.68	-5.2
3,841,598	+		CCNA_03680	0.68	-3.5
3,841,606	-		CCNA_03680	0.68	-2.3
3,841,606	-		CCNA_03680	0.68	-3.3
3,841,610	-		CCNA_03680	0.68	-4.0
3,841,647	+		CCNA_03680	0.69	-2.4
3,841,655	-		CCNA_03680	0.70	-2.0
3,841,655	-		CCNA_03680	0.70	-2.9
3,841,686	+		CCNA_03680	0.70	-4.4
3,841,686	+		CCNA_03680	0.70	-2.8
3,841,729	+		CCNA_03680	0.72	-4.1
3,841,732	-		CCNA_03680	0.72	-4.7
3,841,748	+		CCNA_03680	0.72	-2.4
3,841,750	-		CCNA_03680	0.72	-5.1
3,841,753	+		CCNA_03680	0.72	-2.9
3,841,760	+		CCNA_03680	0.72	-5.1
3,841,761	-		CCNA_03680	0.72	-3.6
3,841,763	+		CCNA_03680	0.73	-3.4
3,841,792	+		CCNA_03680	0.73	-4.9
3,841,800	-		CCNA_03680	0.74	-6.0
3,841,800	-		CCNA_03680	0.74	-4.7
3,841,803	+		CCNA_03680	0.74	-6.4
3,841,806	-		CCNA_03680	0.74	-5.5
3,841,808	+		CCNA_03680	0.74	-3.4
3,841,818	-		CCNA_03680	0.74	-4.1
3,841,837	+		CCNA_03680	0.75	-4.7
3,841,845	-		CCNA_03680	0.75	-5.1
3,841,865	+		CCNA_03680	0.75	-2.2
3,841,898	+		CCNA_03680	0.76	-1.8
3,841,913	+		CCNA_03680	0.77	-0.0
3,841,913	+		CCNA_03680	0.77	-0.0
3,841,913	+		CCNA_03680	0.77	-2.2
3,841,921	-		CCNA_03680	0.77	-3.4
3,841,921	-		CCNA_03680	0.77	-1.9
3,841,921	-		CCNA_03680	0.77	-0.3
3,841,926	-		CCNA_03680	0.77	-5.1
3,841,939	-		CCNA_03680	0.77	-5.0
3,841,941	+		CCNA_03680	0.77	-5.1
3,841,958	-		CCNA_03680	0.78	+2.0
3,841,966	+		CCNA_03680	0.78	-1.7
3,841,974	+		CCNA_03680	0.78	-2.7
3,841,974	+		CCNA_03680	0.78	-3.4
3,841,982	-		CCNA_03680	0.79	-3.1
3,841,982	-		CCNA_03680	0.79	-6.0
3,841,982	-		CCNA_03680	0.79	-4.6
3,842,016	-		CCNA_03680	0.80	-4.6
3,842,024	+		CCNA_03680	0.80	-3.1
3,842,029	+		CCNA_03680	0.80	-3.8
3,842,034	-		CCNA_03680	0.80	-5.2
3,842,056	+		CCNA_03680	0.81	-3.8
3,842,056	+		CCNA_03680	0.81	-3.3
3,842,056	+		CCNA_03680	0.81	-1.4
3,842,063	+		CCNA_03680	0.81	-2.6
3,842,063	-		CCNA_03680	0.81	-6.1
3,842,069	-		CCNA_03680	0.81	-6.5
3,842,076	-		CCNA_03680	0.81	-5.3
3,842,081	+		CCNA_03680	0.81	-3.6
3,842,089	-		CCNA_03680	0.82	-5.3
3,842,089	-		CCNA_03680	0.82	-3.3
3,842,100	+		CCNA_03680	0.82	-3.2
3,842,100	+		CCNA_03680	0.82	-1.8
3,842,108	-		CCNA_03680	0.82	-5.4
3,842,114	+		CCNA_03680	0.82	-4.1
3,842,149	-		CCNA_03680	0.83	-7.7
3,842,161	+		CCNA_03680	0.84	-3.2
3,842,188	-		CCNA_03680	0.84	-3.4
3,842,216	-		CCNA_03680	0.85	-4.3
3,842,222	-		CCNA_03680	0.85	-5.0
3,842,226	-		CCNA_03680	0.85	-4.1
3,842,226	-		CCNA_03680	0.85	-3.7
3,842,250	+		CCNA_03680	0.86	-1.7
3,842,262	-		CCNA_03680	0.86	-5.2
3,842,264	+		CCNA_03680	0.86	-2.3
3,842,270	-		CCNA_03680	0.87	-5.4
3,842,277	-		CCNA_03680	0.87	-2.4
3,842,303	-		CCNA_03680	0.88	-5.3
3,842,328	+		CCNA_03680	0.88	-2.2
3,842,334	+		CCNA_03680	0.88	-2.6
3,842,448	-				-3.6
3,842,474	+				-3.4
3,842,487	+				-1.0
3,842,566	+				-4.9
3,842,572	-				-5.5
3,842,574	-				-2.8
3,842,574	-				-5.6
3,842,575	+				-1.6
3,842,583	-				-4.5
3,842,583	-				-5.0
3,842,593	-				-3.4
3,842,687	+				-2.7
3,842,687	+				-0.0
3,842,695	-				-5.4
3,842,695	-				-3.9
3,842,729	-				-5.0
3,842,758	-				+0.6
3,842,822	+				-4.7
3,842,846	+				-4.4
3,842,846	+				-2.7
3,842,864	-		CCNA_03681	0.12	-3.4
3,842,956	+		CCNA_03681	0.22	-3.5
3,842,993	+		CCNA_03681	0.26	-4.7
3,843,011	+		CCNA_03681	0.28	-3.4
3,843,055	+		CCNA_03681	0.33	-2.7
3,843,063	-		CCNA_03681	0.34	-3.4
3,843,063	-		CCNA_03681	0.34	-4.1
3,843,063	-		CCNA_03681	0.34	-7.1
3,843,073	-		CCNA_03681	0.35	-6.6
3,843,081	+		CCNA_03681	0.36	-2.7
3,843,094	+		CCNA_03681	0.38	-4.1
3,843,135	+		CCNA_03681	0.42	-4.7
3,843,137	+		CCNA_03681	0.42	-3.5
3,843,145	+		CCNA_03681	0.43	-2.0
3,843,145	+		CCNA_03681	0.43	-7.0
3,843,153	-		CCNA_03681	0.44	-4.6
3,843,153	-		CCNA_03681	0.44	-6.0
3,843,205	+		CCNA_03681	0.50	-1.6
3,843,213	-		CCNA_03681	0.51	-1.9
3,843,232	-		CCNA_03681	0.53	-4.5
3,843,237	-		CCNA_03681	0.54	-5.0
3,843,273	+		CCNA_03681	0.58	-4.0
3,843,273	+		CCNA_03681	0.58	-0.6
3,843,273	+		CCNA_03681	0.58	-4.4
3,843,281	-		CCNA_03681	0.59	-5.8
3,843,281	-		CCNA_03681	0.59	-5.2
3,843,296	-		CCNA_03681	0.60	-3.9
3,843,306	+		CCNA_03681	0.61	-2.8
3,843,339	+		CCNA_03681	0.65	-2.4
3,843,347	-		CCNA_03681	0.66	-5.5
3,843,351	+		CCNA_03681	0.67	-5.3
3,843,352	-		CCNA_03681	0.67	-6.6
3,843,352	-		CCNA_03681	0.67	-3.2
3,843,367	-		CCNA_03681	0.68	-6.8
3,843,375	+		CCNA_03681	0.69	-3.2
3,843,396	+		CCNA_03681	0.72	-4.7
3,843,419	-		CCNA_03681	0.74	-3.8
3,843,423	+		CCNA_03681	0.75	-1.7
3,843,423	+		CCNA_03681	0.75	-1.2
3,843,433	+		CCNA_03681	0.76	-4.6
3,843,435	+		CCNA_03681	0.76	-1.8
3,843,436	+		CCNA_03681	0.76	-3.4
3,843,441	-		CCNA_03681	0.77	-4.1
3,843,443	-		CCNA_03681	0.77	-6.0
3,843,454	+		CCNA_03681	0.78	-1.5
3,843,454	+		CCNA_03681	0.78	-4.3
3,843,462	-		CCNA_03681	0.79	-6.1
3,843,462	-		CCNA_03681	0.79	-4.6
3,843,462	-				+2.0
3,843,463	-		CCNA_03681	0.79	-4.2
3,843,523	-		CCNA_03681	0.86	-2.0
3,843,523	-		CCNA_03681	0.86	-7.1
3,843,579	+				+1.0
3,843,579	+				-3.6
3,843,587	-				-5.6
3,843,587	-				-5.7
3,843,589	+				-3.0
3,843,589	+				-4.1
3,843,619	-				-3.9
3,843,620	-				-6.5
3,843,638	+				-4.5
3,843,646	-				-0.6
3,843,687	+				-1.8
3,843,692	+				-1.2
3,843,695	-				-1.5
3,843,695	-				-2.2
3,843,700	-				-1.3
3,843,713	-				-0.5