Experiment: PYE 0.5x 25C survival rep3 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01738 and CCNA_01739 are separated by 204 nucleotides CCNA_01739 and CCNA_01740 are separated by 13 nucleotides CCNA_01740 and CCNA_01741 are separated by 14 nucleotides CCNA_01741 and CCNA_01742 are separated by 268 nucleotides
CCNA_01738: CCNA_01738 - TonB-dependent outer membrane receptor, at 1,866,634 to 1,869,063
_01738
CCNA_01739: CCNA_01739 - LSU ribosomal protein L9P, at 1,869,268 to 1,869,852
_01739
CCNA_01740: CCNA_01740 - SSU ribosomal protein S18P, at 1,869,866 to 1,870,144
_01740
CCNA_01741: CCNA_01741 - SSU ribosomal protein S6P, at 1,870,159 to 1,870,539
_01741
CCNA_01742: CCNA_01742 - hypothetical protein, at 1,870,808 to 1,871,467
_01742
Position (kb)
1869
1870
1871 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1868.903 kb on - strand at 1868.905 kb on + strand at 1868.920 kb on - strand at 1868.922 kb on - strand at 1868.979 kb on - strand at 1869.012 kb on - strand at 1869.025 kb on - strand at 1869.050 kb on + strand at 1869.058 kb on - strand at 1869.273 kb on - strand at 1869.273 kb on - strand at 1869.273 kb on - strand at 1869.273 kb on - strand at 1869.327 kb on - strand, within CCNA_01739 at 1869.431 kb on - strand, within CCNA_01739 at 1869.431 kb on - strand, within CCNA_01739 at 1869.432 kb on - strand, within CCNA_01739 at 1869.454 kb on - strand, within CCNA_01739 at 1869.487 kb on - strand, within CCNA_01739 at 1869.632 kb on - strand, within CCNA_01739 at 1869.642 kb on - strand, within CCNA_01739 at 1869.642 kb on - strand, within CCNA_01739 at 1869.642 kb on - strand, within CCNA_01739 at 1869.747 kb on - strand, within CCNA_01739 at 1869.752 kb on - strand, within CCNA_01739 at 1869.884 kb on - strand at 1870.778 kb on + strand at 1870.778 kb on + strand at 1870.786 kb on - strand at 1870.786 kb on - strand at 1870.818 kb on + strand at 1870.826 kb on - strand at 1870.870 kb on + strand at 1870.870 kb on + strand at 1870.946 kb on + strand, within CCNA_01742 at 1870.946 kb on + strand, within CCNA_01742 at 1870.954 kb on - strand, within CCNA_01742 at 1870.954 kb on - strand, within CCNA_01742 at 1871.046 kb on - strand, within CCNA_01742 at 1871.050 kb on + strand, within CCNA_01742 at 1871.064 kb on + strand, within CCNA_01742 at 1871.079 kb on + strand, within CCNA_01742 at 1871.087 kb on - strand, within CCNA_01742 at 1871.087 kb on - strand, within CCNA_01742 at 1871.141 kb on - strand, within CCNA_01742
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 25C survival rep3 12 days remove 1,868,903 - +0.2 1,868,905 + -1.5 1,868,920 - +2.3 1,868,922 - +1.0 1,868,979 - +0.1 1,869,012 - +0.5 1,869,025 - +0.6 1,869,050 + +1.2 1,869,058 - +0.7 1,869,273 - -2.9 1,869,273 - +0.5 1,869,273 - -1.3 1,869,273 - -2.8 1,869,327 - CCNA_01739 0.10 +0.9 1,869,431 - CCNA_01739 0.28 -0.1 1,869,431 - CCNA_01739 0.28 -3.4 1,869,432 - CCNA_01739 0.28 +0.5 1,869,454 - CCNA_01739 0.32 -2.7 1,869,487 - CCNA_01739 0.37 -4.7 1,869,632 - CCNA_01739 0.62 -2.1 1,869,642 - CCNA_01739 0.64 -3.9 1,869,642 - CCNA_01739 0.64 -3.7 1,869,642 - CCNA_01739 0.64 -1.9 1,869,747 - CCNA_01739 0.82 -2.6 1,869,752 - CCNA_01739 0.83 -0.3 1,869,884 - -0.8 1,870,778 + -0.0 1,870,778 + -0.9 1,870,786 - -0.7 1,870,786 - +1.1 1,870,818 + +0.1 1,870,826 - -1.9 1,870,870 + +0.4 1,870,870 + +0.2 1,870,946 + CCNA_01742 0.21 +0.1 1,870,946 + CCNA_01742 0.21 +0.4 1,870,954 - CCNA_01742 0.22 -1.0 1,870,954 - CCNA_01742 0.22 +2.5 1,871,046 - CCNA_01742 0.36 -0.1 1,871,050 + CCNA_01742 0.37 +0.2 1,871,064 + CCNA_01742 0.39 +0.8 1,871,079 + CCNA_01742 0.41 +1.1 1,871,087 - CCNA_01742 0.42 +1.5 1,871,087 - CCNA_01742 0.42 +0.5 1,871,141 - CCNA_01742 0.50 +0.9
Or see this region's nucleotide sequence