Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01740

Experiment: PYE 0.5x 25C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01738 and CCNA_01739 are separated by 204 nucleotidesCCNA_01739 and CCNA_01740 are separated by 13 nucleotidesCCNA_01740 and CCNA_01741 are separated by 14 nucleotidesCCNA_01741 and CCNA_01742 are separated by 268 nucleotides CCNA_01738: CCNA_01738 - TonB-dependent outer membrane receptor, at 1,866,634 to 1,869,063 _01738 CCNA_01739: CCNA_01739 - LSU ribosomal protein L9P, at 1,869,268 to 1,869,852 _01739 CCNA_01740: CCNA_01740 - SSU ribosomal protein S18P, at 1,869,866 to 1,870,144 _01740 CCNA_01741: CCNA_01741 - SSU ribosomal protein S6P, at 1,870,159 to 1,870,539 _01741 CCNA_01742: CCNA_01742 - hypothetical protein, at 1,870,808 to 1,871,467 _01742 Position (kb) 1869 1870 1871Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1868.903 kb on - strandat 1868.905 kb on + strandat 1868.920 kb on - strandat 1868.922 kb on - strandat 1868.979 kb on - strandat 1869.012 kb on - strandat 1869.025 kb on - strandat 1869.050 kb on + strandat 1869.058 kb on - strandat 1869.273 kb on - strandat 1869.273 kb on - strandat 1869.273 kb on - strandat 1869.273 kb on - strandat 1869.327 kb on - strand, within CCNA_01739at 1869.431 kb on - strand, within CCNA_01739at 1869.431 kb on - strand, within CCNA_01739at 1869.432 kb on - strand, within CCNA_01739at 1869.454 kb on - strand, within CCNA_01739at 1869.487 kb on - strand, within CCNA_01739at 1869.632 kb on - strand, within CCNA_01739at 1869.642 kb on - strand, within CCNA_01739at 1869.642 kb on - strand, within CCNA_01739at 1869.642 kb on - strand, within CCNA_01739at 1869.747 kb on - strand, within CCNA_01739at 1869.752 kb on - strand, within CCNA_01739at 1869.884 kb on - strandat 1870.778 kb on + strandat 1870.778 kb on + strandat 1870.786 kb on - strandat 1870.786 kb on - strandat 1870.818 kb on + strandat 1870.826 kb on - strandat 1870.870 kb on + strandat 1870.870 kb on + strandat 1870.946 kb on + strand, within CCNA_01742at 1870.946 kb on + strand, within CCNA_01742at 1870.954 kb on - strand, within CCNA_01742at 1870.954 kb on - strand, within CCNA_01742at 1871.046 kb on - strand, within CCNA_01742at 1871.050 kb on + strand, within CCNA_01742at 1871.064 kb on + strand, within CCNA_01742at 1871.079 kb on + strand, within CCNA_01742at 1871.087 kb on - strand, within CCNA_01742at 1871.087 kb on - strand, within CCNA_01742at 1871.141 kb on - strand, within CCNA_01742

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 25C survival rep3 12 days
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1,868,903 - +0.2
1,868,905 + -1.5
1,868,920 - +2.3
1,868,922 - +1.0
1,868,979 - +0.1
1,869,012 - +0.5
1,869,025 - +0.6
1,869,050 + +1.2
1,869,058 - +0.7
1,869,273 - -2.9
1,869,273 - +0.5
1,869,273 - -1.3
1,869,273 - -2.8
1,869,327 - CCNA_01739 0.10 +0.9
1,869,431 - CCNA_01739 0.28 -0.1
1,869,431 - CCNA_01739 0.28 -3.4
1,869,432 - CCNA_01739 0.28 +0.5
1,869,454 - CCNA_01739 0.32 -2.7
1,869,487 - CCNA_01739 0.37 -4.7
1,869,632 - CCNA_01739 0.62 -2.1
1,869,642 - CCNA_01739 0.64 -3.9
1,869,642 - CCNA_01739 0.64 -3.7
1,869,642 - CCNA_01739 0.64 -1.9
1,869,747 - CCNA_01739 0.82 -2.6
1,869,752 - CCNA_01739 0.83 -0.3
1,869,884 - -0.8
1,870,778 + -0.0
1,870,778 + -0.9
1,870,786 - -0.7
1,870,786 - +1.1
1,870,818 + +0.1
1,870,826 - -1.9
1,870,870 + +0.4
1,870,870 + +0.2
1,870,946 + CCNA_01742 0.21 +0.1
1,870,946 + CCNA_01742 0.21 +0.4
1,870,954 - CCNA_01742 0.22 -1.0
1,870,954 - CCNA_01742 0.22 +2.5
1,871,046 - CCNA_01742 0.36 -0.1
1,871,050 + CCNA_01742 0.37 +0.2
1,871,064 + CCNA_01742 0.39 +0.8
1,871,079 + CCNA_01742 0.41 +1.1
1,871,087 - CCNA_01742 0.42 +1.5
1,871,087 - CCNA_01742 0.42 +0.5
1,871,141 - CCNA_01742 0.50 +0.9

Or see this region's nucleotide sequence