Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2881

Experiment: 2 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2879 and DvMF_2880 are separated by 97 nucleotidesDvMF_2880 and DvMF_2881 overlap by 59 nucleotidesDvMF_2881 and DvMF_2882 overlap by 4 nucleotides DvMF_2879: DvMF_2879 - PTS system mannose/fructose/sorbose family IID component (RefSeq), at 3,637,018 to 3,637,797 _2879 DvMF_2880: DvMF_2880 - Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq), at 3,637,895 to 3,638,734 _2880 DvMF_2881: DvMF_2881 - protein of unknown function UPF0102 (RefSeq), at 3,638,676 to 3,639,116 _2881 DvMF_2882: DvMF_2882 - Ribonuclease H (RefSeq), at 3,639,113 to 3,639,991 _2882 Position (kb) 3638 3639 3640Strain fitness (log2 ratio) -1 0 1at 3637.900 kb on - strandat 3638.184 kb on + strand, within DvMF_2880at 3638.188 kb on + strand, within DvMF_2880at 3638.217 kb on + strand, within DvMF_2880at 3638.274 kb on - strand, within DvMF_2880at 3638.368 kb on - strand, within DvMF_2880at 3638.378 kb on - strand, within DvMF_2880at 3638.413 kb on + strand, within DvMF_2880at 3638.546 kb on - strand, within DvMF_2880at 3638.707 kb on + strandat 3638.740 kb on - strand, within DvMF_2881at 3638.766 kb on + strand, within DvMF_2881at 3638.869 kb on - strand, within DvMF_2881at 3638.913 kb on + strand, within DvMF_2881at 3639.120 kb on + strandat 3639.215 kb on - strand, within DvMF_2882at 3639.232 kb on - strand, within DvMF_2882at 3639.279 kb on + strand, within DvMF_2882at 3639.282 kb on - strand, within DvMF_2882at 3639.356 kb on - strand, within DvMF_2882

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 day starvation, 30C
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3,637,900 - -0.0
3,638,184 + DvMF_2880 0.34 +0.3
3,638,188 + DvMF_2880 0.35 +0.8
3,638,217 + DvMF_2880 0.38 +0.3
3,638,274 - DvMF_2880 0.45 +1.4
3,638,368 - DvMF_2880 0.56 +0.1
3,638,378 - DvMF_2880 0.57 +0.6
3,638,413 + DvMF_2880 0.62 +0.2
3,638,546 - DvMF_2880 0.78 +0.7
3,638,707 + +0.9
3,638,740 - DvMF_2881 0.15 +0.4
3,638,766 + DvMF_2881 0.20 +0.4
3,638,869 - DvMF_2881 0.44 +0.8
3,638,913 + DvMF_2881 0.54 +0.5
3,639,120 + +1.1
3,639,215 - DvMF_2882 0.12 +0.1
3,639,232 - DvMF_2882 0.14 -0.1
3,639,279 + DvMF_2882 0.19 -0.1
3,639,282 - DvMF_2882 0.19 -0.2
3,639,356 - DvMF_2882 0.28 +0.0

Or see this region's nucleotide sequence