Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2265

Experiment: 2 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2264 and DvMF_2265 are separated by 142 nucleotidesDvMF_2265 and DvMF_2266 are separated by 184 nucleotides DvMF_2264: DvMF_2264 - DNA binding domain protein, excisionase family (RefSeq), at 2,844,568 to 2,845,554 _2264 DvMF_2265: DvMF_2265 - transcriptional regulator, MarR family (RefSeq), at 2,845,697 to 2,846,587 _2265 DvMF_2266: DvMF_2266 - putative lipoprotein (RefSeq), at 2,846,772 to 2,848,310 _2266 Position (kb) 2845 2846 2847Strain fitness (log2 ratio) -1 0 1at 2844.828 kb on - strand, within DvMF_2264at 2844.840 kb on + strand, within DvMF_2264at 2844.918 kb on - strand, within DvMF_2264at 2844.943 kb on - strand, within DvMF_2264at 2844.944 kb on - strand, within DvMF_2264at 2845.101 kb on + strand, within DvMF_2264at 2845.125 kb on + strand, within DvMF_2264at 2845.125 kb on + strand, within DvMF_2264at 2845.125 kb on + strand, within DvMF_2264at 2845.133 kb on - strand, within DvMF_2264at 2845.276 kb on - strand, within DvMF_2264at 2845.376 kb on + strand, within DvMF_2264at 2845.501 kb on + strandat 2845.604 kb on - strandat 2845.678 kb on + strandat 2845.720 kb on + strandat 2845.952 kb on + strand, within DvMF_2265at 2845.952 kb on + strand, within DvMF_2265at 2845.971 kb on - strand, within DvMF_2265at 2847.030 kb on + strand, within DvMF_2266at 2847.042 kb on + strand, within DvMF_2266at 2847.103 kb on - strand, within DvMF_2266at 2847.283 kb on - strand, within DvMF_2266

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 day starvation, 30C
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2,844,828 - DvMF_2264 0.26 +0.4
2,844,840 + DvMF_2264 0.28 +0.2
2,844,918 - DvMF_2264 0.35 -0.0
2,844,943 - DvMF_2264 0.38 +0.4
2,844,944 - DvMF_2264 0.38 +1.0
2,845,101 + DvMF_2264 0.54 +0.8
2,845,125 + DvMF_2264 0.56 -0.0
2,845,125 + DvMF_2264 0.56 +0.3
2,845,125 + DvMF_2264 0.56 +0.4
2,845,133 - DvMF_2264 0.57 -0.4
2,845,276 - DvMF_2264 0.72 +0.7
2,845,376 + DvMF_2264 0.82 +0.2
2,845,501 + +1.3
2,845,604 - +0.7
2,845,678 + -0.2
2,845,720 + -1.3
2,845,952 + DvMF_2265 0.29 -0.3
2,845,952 + DvMF_2265 0.29 -0.7
2,845,971 - DvMF_2265 0.31 -1.3
2,847,030 + DvMF_2266 0.17 +0.1
2,847,042 + DvMF_2266 0.18 -0.2
2,847,103 - DvMF_2266 0.22 +0.4
2,847,283 - DvMF_2266 0.33 +0.0

Or see this region's nucleotide sequence