Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2261

Experiment: 2 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2259 and DvMF_2260 overlap by 4 nucleotidesDvMF_2260 and DvMF_2261 overlap by 13 nucleotidesDvMF_2261 and DvMF_2262 are separated by 139 nucleotides DvMF_2259: DvMF_2259 - ABC transporter related (RefSeq), at 2,838,525 to 2,839,349 _2259 DvMF_2260: DvMF_2260 - cobalamin synthesis protein P47K (RefSeq), at 2,839,346 to 2,840,125 _2260 DvMF_2261: DvMF_2261 - hypothetical protein (RefSeq), at 2,840,113 to 2,841,198 _2261 DvMF_2262: DvMF_2262 - hypothetical protein (RefSeq), at 2,841,338 to 2,842,216 _2262 Position (kb) 2840 2841 2842Strain fitness (log2 ratio) -1 0 1at 2839.179 kb on + strand, within DvMF_2259at 2839.187 kb on - strand, within DvMF_2259at 2839.187 kb on - strand, within DvMF_2259at 2839.384 kb on + strandat 2839.416 kb on + strandat 2839.417 kb on + strandat 2839.474 kb on - strand, within DvMF_2260at 2839.576 kb on - strand, within DvMF_2260at 2839.605 kb on - strand, within DvMF_2260at 2839.615 kb on - strand, within DvMF_2260at 2839.619 kb on - strand, within DvMF_2260at 2839.619 kb on - strand, within DvMF_2260at 2839.851 kb on - strand, within DvMF_2260at 2839.860 kb on + strand, within DvMF_2260at 2839.901 kb on - strand, within DvMF_2260at 2839.927 kb on + strand, within DvMF_2260at 2840.029 kb on - strand, within DvMF_2260at 2840.233 kb on + strand, within DvMF_2261at 2840.509 kb on - strand, within DvMF_2261at 2840.811 kb on + strand, within DvMF_2261at 2840.843 kb on + strand, within DvMF_2261at 2840.993 kb on - strand, within DvMF_2261at 2841.168 kb on - strandat 2841.205 kb on + strandat 2841.269 kb on - strandat 2841.320 kb on - strandat 2841.446 kb on - strand, within DvMF_2262at 2841.512 kb on + strand, within DvMF_2262at 2841.613 kb on + strand, within DvMF_2262at 2841.621 kb on - strand, within DvMF_2262at 2841.699 kb on - strand, within DvMF_2262at 2841.754 kb on + strand, within DvMF_2262at 2841.754 kb on + strand, within DvMF_2262at 2841.754 kb on + strand, within DvMF_2262at 2841.754 kb on + strand, within DvMF_2262at 2841.762 kb on - strand, within DvMF_2262at 2841.762 kb on - strand, within DvMF_2262at 2841.813 kb on + strand, within DvMF_2262at 2841.939 kb on - strand, within DvMF_2262at 2842.002 kb on - strand, within DvMF_2262

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 day starvation, 30C
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2,839,179 + DvMF_2259 0.79 +0.6
2,839,187 - DvMF_2259 0.80 +0.3
2,839,187 - DvMF_2259 0.80 +0.1
2,839,384 + -0.1
2,839,416 + +0.2
2,839,417 + +0.7
2,839,474 - DvMF_2260 0.16 +0.0
2,839,576 - DvMF_2260 0.29 +0.1
2,839,605 - DvMF_2260 0.33 +1.5
2,839,615 - DvMF_2260 0.34 +1.5
2,839,619 - DvMF_2260 0.35 +0.3
2,839,619 - DvMF_2260 0.35 +0.6
2,839,851 - DvMF_2260 0.65 +1.2
2,839,860 + DvMF_2260 0.66 +0.8
2,839,901 - DvMF_2260 0.71 +0.2
2,839,927 + DvMF_2260 0.74 +0.2
2,840,029 - DvMF_2260 0.88 +0.4
2,840,233 + DvMF_2261 0.11 +0.2
2,840,509 - DvMF_2261 0.36 +0.1
2,840,811 + DvMF_2261 0.64 +0.5
2,840,843 + DvMF_2261 0.67 +0.2
2,840,993 - DvMF_2261 0.81 +0.9
2,841,168 - -0.7
2,841,205 + +0.3
2,841,269 - +0.8
2,841,320 - +1.2
2,841,446 - DvMF_2262 0.12 +0.4
2,841,512 + DvMF_2262 0.20 +0.1
2,841,613 + DvMF_2262 0.31 -0.1
2,841,621 - DvMF_2262 0.32 +0.4
2,841,699 - DvMF_2262 0.41 +0.1
2,841,754 + DvMF_2262 0.47 +0.1
2,841,754 + DvMF_2262 0.47 +0.2
2,841,754 + DvMF_2262 0.47 +0.6
2,841,754 + DvMF_2262 0.47 +0.2
2,841,762 - DvMF_2262 0.48 +0.1
2,841,762 - DvMF_2262 0.48 +0.1
2,841,813 + DvMF_2262 0.54 +0.6
2,841,939 - DvMF_2262 0.68 +0.5
2,842,002 - DvMF_2262 0.76 +0.1

Or see this region's nucleotide sequence